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Improving evolutionary models for mitochondrial protein data with site-class specific amino acid exchangeability matrices.

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Academic year: 2017

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Table 2. Gap(k) and S k statistics for the mammal and fish mitochondrial datasets.
Figure 4A presents the R matrix for mtMam, and for the three sets of sites grouped according to their physiochemical properties.
Figure 4. Plots of empirically estimated rate matrices ( R ) for complete and partitioned sets of (A) mammalian and (B) fish mitochondrial sequences
Figure 5. Heatmaps showing the difference between the group-specific rate matrices ( R 1 , R 2 , R 3 ) and the rate matrix estimated from the complete dataset ( R 0 )
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