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Novel nucleotide and amino acid covariation between the 5'UTR and the NS2/NS3 proteins of hepatitis C virus: bioinformatic and functional analyses.

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Academic year: 2017

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Figure 1. Binary HCV sequence components used for prediction of site-specific covariation between UTRs and NS proteins
Figure 2. Frequencies of variation sites assessed from Weka. The covariation sites were predicted at the 59UTR 243 nucleotide position and their corresponding amino acid sites in HCV NS2 or NS3
Figure 5. Transient-replication assay of the NS2-3 9 and NS3-3 9 replicons. The replicons each carried wild-type (59UTR 243 G), 59UTR-G 243 A, 5 9 UTR-G 243 T and 5 9 UTR-G 243 C
Figure 7. Modulation of HCV replication by exogenously expressed NS2 protein. (A) Three micrograms of each wild-type or variant NS2-flag expression plasmids were transfected into stable  NS3-39-Feo-59UTR 243 G (black bar) or NS3-39-Feo-59UTR 243 A (white b
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