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CONTENTS

Supplement 9

Volume 10

2009

BMC

Bioinformatics

Editor-in-Chief

Melissa Norton, MD

Biology Editor

Penny Webb, PhD

In-house Editor

Tim Sands

BMC Bioinformatics

(www.biomedcentral.com/bmc bioinformatics) is an open access journal published by BioMed Central Ltd. The journal publishes original peer-reviewed research articles in all aspects of computational methods used in the analysis and annotation of sequences and structures, as well as all other areas of computational biology.

BMC Bioinformatics

(ISSN 1471-2105) is indexed/tracked/covered by PubMed, MEDLINE, BIOSIS, CAS, Scopus, EMBASE, Thomson Reuters (ISI) and Google Scholar.

Contact BioMed Central

supplements@ biomedcentral.com

Proceedings of the 2009 AMIA Summit on Translational

Bioinformatics

San Francisco, CA, USA

15-17 March 2009

www.biomedcentral.com/1471-2105/10?issue=S9

I1 Selected proceedings of the 2009 Summit on Translational Bioinformatics

Yves A Lussier and Indra Neil Sarkar

S1Transcriptional network classifiers

Hsun-Hsien Chang and Marco F Ramoni

S2 Analysis of AML genes in dysregulated molecular networks

Eunjung Lee et al.

S3 Network analysis of genes regulated in renal diseases: implications for a molecular-based classification

Suresh K Bhavnani et al.

S4 Infection in the intensive care unit alters physiological networks

Adam D Grossman et al.

S5 A systems biology approach to the identification and analysis of transcriptional regulatory networks in osteocytes

Angela K Dean et al.

S6 Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia

Xinan Yang et al.

S7 PAPAyA: a platform for breast cancer biomarker signature discovery, evaluation and assessment

Angel Janevski et al.

S8 The potential for automated question answering in the context of genomic medicine: An assessment of existing resources and properties of answers

Casey Lynnette Overby et al.

S9 Towards large-scale sample annotation in gene expression Repositories

Erik Pitzer et al.

S10 Evaluation of a large-scale biomedical data annotation initiative

Ronilda Lacson et al.

S11 Evaluating the Accuracy of a Functional SNP Annotation System

Terry H Sheni et al.

S12 Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease

Brett R South et al.

S13 Characterizing environmental and phenotypic associations using information theory and electronic health records

Xiaoyan Wang et al.

S14 Comparison of concept recognizers for building the Open Biomedical Annotator

Nigam H Shah et al.

S15 Feature selection for fMRI-based deception detection

Bo Jin et al.

S16 Knowledge-based variable selection for learning rules from proteomic data

Jonathan L Lustgarten et al.

S17 Structural similarity assessment for drug sensitivity prediction in cancer

Pavithra Shivakumar and Michael Krauthammer

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