w ww . e l s e v i e r . c o m / l o c a t e / b j p
Original Article
Cytotoxic activity of abietane diterpenoids from roots of Salvia sahendica by HPLC-based activity profiling
Fahimeh Moradi-Afrapoli
a,b, Mohammad Shokrzadeh
c, Fatemeh Barzegar
d, Gilar Gorji-Bahri
e, Reza Zadali
f, Samad Nejad Ebrahimi
g,∗aDepartmentofPharmacognosy,FacultyofPharmacy,MazandaranUniversityofMedicalSciences,Sari,Iran
bDepartmentofPharmaceuticalSciences,UniversityofBasel,Basel,Switzerland
cDepartmentofToxicology,FacultyofPharmacy,MazandaranPharmaceuticalSciencesResearchCenter,MazandaranUniversityofMedicalSciences,Sari,Iran
dDepartmentofClinicalPharmacy,FacultyofPharmacy,MazandaranUniversityofMedicalSciences,Sari,Iran
eDepartmentofPharmaceuticalBiotechnology,SchoolofPharmacy,ShahidBeheshtiUniversityofMedicalSciences,Tehran,Iran
fDepartmentofPharmacognosy,FacultyofPharmacy,TehranUniversityofMedicalSciences,Tehran,Iran
gDepartmentofPhytochemistry,MedicinalPlantsandDrugsResearchInstitute,ShahidBeheshtiUniversity,Evin,Tehran,Iran
a r t i c l e i n f o
Articlehistory:
Received15June2017 Accepted28November2017 Availableonline18January2018
Keywords:
Diterpene Cancercelllines MTT
Cytotoxicity Molecularmodeling
a b s t r a c t
Screeningofmedicinalplantsfrom Iranianfloraagainsthuman cancercell-lineshaveshownthat anhexaneextractfromrootsofSalviasahendicaBoiss.&Buhse,Lamiaceae,isactiveagainsthuman cervicalcancer(HeLa)andcolorectaladenocarcinoma(Caco-2)cell-linesatthetestconcentrationof 100g/ml(100%inhibition).CytotoxicityoftheextractwaslocalizedwiththeaidofHPLC-time-based activityprofilingadaptedtothetetrazoliumcolorimetricbioassay.Fourabietane-typediterpenoidsin activetime-windowswereidentifiedascytotoxiccompoundsnamely:sahandone(1),sahandol(2),12- deoxy-salvipisone(3)andsahandinone(4).Compound1showedthehighesttoxicityagainstHeLacells (IC50=5.6±0.1g/ml),whichwascomparablewithbetulinicacid(IC50=4.3±1.2g/ml),thepositive control.Compound2wasactiveagainsttheHeLacells(IC50=8.9±0.7g/ml)butnottheCaco-2cell- line.Compounds1,3and4exhibitedmoderateactivity(IC50=22.9–41.4g/ml)againsttheCaco-2cells.
ThisstudyrevealsthattheHeLacellsaremoresensitivetoalltestedcompoundsthantheCaco-2cells.
Insilicomoleculardockingstudyshowedarigidbindingofthecompoundstotyrosinekinasepp60src, andprovedtheircytotoxicactivity.
©2018SociedadeBrasileiradeFarmacognosia.PublishedbyElsevierEditoraLtda.Thisisanopen accessarticleundertheCCBY-NC-NDlicense(http://creativecommons.org/licenses/by-nc-nd/4.0/).
Introduction
Unregulatedproliferationofcellsduetogeneticalterationsin thebodygeneratescancer.Eachyear,morethan10millionpeople worldwidearediagnosedwithcancerwhilehalfofthepatientsare notsuccessfullytreatedwiththeexistinganticancermedications (Saeidnia, 2015).Therestrictionsandside effectsofthecurrent anti-cancerdrugscreateaconstantdemandfordiscoveryofnew effectiveagents.
SalviaasthemostprevalentgenusoftheLamiaceaefamilyrep- resents more than58 species in Iran(Mozaffarian,2010).Arial parts ofthe plantare aromatic,and have beenused in Iranian folkmedicineasananti-inflammatoryremedy,andalsofortreat- ment ofdyspepsia and gastricdisorders (Esmaeili etal., 2009).
∗ Correspondingauthor.
E-mail:sebrahimi@sbu.ac.ir(S.NejadEbrahimi).
SalviasahendicaBoiss.&Buhse,anendemicplantofIran,grows widely in northwest of the country, at thefeet of the Sahand Mountains(Rechinger,1982).Previousphytochemicalstudieshave revealedthepresenceof sesterterpenes,nor-sesterterpenesand nor-diterpenes in the aerial parts of S. sahendica (Moghaddam et al., 1995). However, roots of the plant were reported to berich in abietane type diterpenoids(HadavandMirzaei etal., 2017; Jassbi et al., 2006; Salehi et al., 2007; Moradi-Afrapoli etal.,2013).ContinuingourinvestigationsonIranianmedicinal plants,inthecurrentstudy,wereportoncytotoxicactivitiesof roots of S. sahendicaagainst human cancercell-lines. We have implemented HPLC-time-based activityprofiling as a miniatur- ized and rapid approach for tracking cytotoxic constituents in the plant extract. In recent years this approach hasbeen suc- cessfullyappliedfordiscoveryofnewanti-protozoalsubstances, positiveGABAAreceptormodulatorsandanti-HIVcompounds(Kim et al., 2008; Adams et al., 2009; Moradi-Afrapoli et al., 2013;
Potterat andHamburger, 2014).In thisarticle, we reportnovel
https://doi.org/10.1016/j.bjp.2017.11.007
0102-695X/©2018SociedadeBrasileiradeFarmacognosia.PublishedbyElsevierEditoraLtda.ThisisanopenaccessarticleundertheCCBY-NC-NDlicense(http://
creativecommons.org/licenses/by-nc-nd/4.0/).
cytotoxiccompoundsobtainedfromahexaneextractofS.sahen- dica’s roots, and evaluate their activityagainst human cervical cancer(HeLa)andcolorectaladenocarcinoma(Caco-2)cell-lines withcombination of in silico methods for evaluating cytotoxic potential.
Materialandmethods Generalmaterials
3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bro- mide(MTT)andBovineserumalbumin(BSA)wereprovidedby Sigma–Aldrich(Germany). Dulbecco’s modified Eagle’s medium (DMEM) and fetal bovine serum (FBS) “Gold” were from PAA (Germany).Trypsin-EDTAwaspurchasedfromBoehringerIngel- heim(Germany).HeLacelllinewasprovidedbyPasteurInstitute ofIran.Caco-2cells weregiftedbyProfessor GeorgiosImanidis atUniversity ofBasel. HPLCseparationswere performedonan Agilent1100seriesHPLCsystemconsistingofaquaternarylow- pressuremixingpumpwithdegassermodule,PDAdetector,and anautosampler.ForMPLC,aBuchiSepacoresystemconsistingofa controlunitC-620,afractioncollectorC-660,andtwopumpmod- ulesC-605wasused.WatersSunFireC18(3.5m,3.0×150mm) andSunFire® PrepC18(5m,30×150mm)columnswereused for analytical HPLC and preparative RP-HPLC, respectively. The detectionwavelengthwas280nm.HPLCsolventscontained0.1%
formicacidforseparations.NPcolumnchromatographywascar- riedoutonsilicagel(Merck,40–63m;460×50mm).Pre-coated silicagel F254 (20×20cm) platesfor TLC(Merck) wasused for monitoringfractions.Solvents usedfor extraction,opencolumn chromatography,andMPLCwereoftechnicalgrade.NMRspectra wererecordedonaBrukerAVANCEIIIspectrometeroperatingat 500.13MHz for1HNMR and125.77MHz for13C NMR.A 1mm TXImicroprobewithz-gradientwasusedfor1H-detectingexper- iments.13CNMRspectrawererecordedwitha5mmBBOprobe withz-gradient.SpectrawereanalyzedusingBrukerTopSpin3.0 software.
Plantmaterial
RootsofSalviasahendicaBoiss.&Buhse,Lamiaceae,werecol- lectedinSeptember2009fromSardrood,East-Azerbaijanprovince ofIran.TheplantwasidentifiedbyDr.AliSonboli,andavoucher specimen(MPH-848)hasbeendepositedattheHerbariumofthe DepartmentofBiology,MedicinalPlantsandDrugsResearchInsti- tute,ShahidBeheshtiUniversity,Tehran,Iran.
Preparationofextract
Theplantmaterialwasshade-driedandgroundwithaRetsch ZM1mill.Thepowderedrootswerepercolatedwithhexane,ethyl- acetateand methanol,successively.Extractionwitheach ofthe solventslastedfor48hatroomtemperature.Theextractswere concentratedunderreducedpressureandfinallydriedwithafreeze dryer.
Microfractionationforactivityprofiling
Aliquotsof360gextractin DMSO(36lof10mg/mlsolu- tion) were separated by analytical HPLC using a C18 column (5l,10×150mm,Interchim).Themobilephasewasamixture of water–acetonitrile containing0.1% formic acid. The gradient startedfrom25%acetonitrileallthewayto100%in30min,and stayedat100%foranother5min.Theflow ratewas0.4ml/min.
Micro-fractionsoftheextractwerecollectedina96-welldeepwell
platewithin1-minintervals(1-minfractions).Theplatewasdried byanitrogenevaporatorsetat40◦C(EvaporexEVX-96,Apricots DesignsInc.,USA).
Cellculture
TheCaco-2cells(humancolorectaladenocarcinomacellline) weregrownin DMEM culturemediumsupplemented withFBS (10%),l-glutamate(200mM),andnonessentialaminoacids(1%).
TheHeLacells(humancervicalcancercellline)weregrowninIPMI medium.Thecellcultureflasksweremaintainedinahumidified incubatorat37◦Cwith5%CO2.Themediawerechangedevery alternateday.The flaskswith80%confluence wereusedinthe experiments.
MTTcytotoxicityassay:cytotoxicityofextractsandpure compounds
Cytotoxicity against the HeLa and Caco-2 cell-lines was determinedbythe3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-2H- tetrazoliumbromide(MTT)assayin96-wellformat(Gerlierand Thomasset,1986;Tofighietal.,2014).Asuspensionofeachcell- linewasseededona96-wellflat-bottomedtissuecultureplateat thedensityof5×103cells/wellandincubatedinahumidifiedincu- bator(37◦C,5%CO2)for48h.Thecellsweretreatedwith200l testsamplesdissolvedinculturemediumatthefinalconcentra- tionof1–100g/ml,andincubatedforthenext48h.Afterwards, 20lMTTreagent(5mg/ml)inPBSwasaddedtoeachwell.The platewasmaintainedonanorbitalshakerat100rpmand37◦Cfor 4htoallowtheMTTreactionbythecellularmitochondrialdehy- drogenases.Finally,themediumwasreplacedwith150lDMSO andthecellswereagitatedonanorbitalshakerfor15mintodis- solvetheformazancrystalsformedbythelivecells.TheUV/Vis absorbanceofeachwellwasreadbyamicroplatereaderat570nm withareferencefilterof620nm.Asetofwellswithnotestsample, treatedwiththehighestconcentrationofDMSO(1%),wasconsid- eredascontrol.Thenaturallyoccurringtriterpenoid,betulinicacid, wasusedaspositivecontrol.Cell-viabilityandcytotoxicitywere calculatedaccordingtothefollowingequations:
Cellviability(%)=(Absorbanceoftestwell/Absorbanceofcontrol)×100
Cytotoxicity (%)=100−cellviability
Cytotoxicityofmicrofractions
Eachofthedriedmicro-fractionsinthe96-wellplatewasdis- solved with 5l solution of DMSO in PBS. Afterwards,culture mediumwasaddedtoeachwelluptothefinalvolumeof450l.
Thevolumesofthemediumbeingaddedtothewellswerecalcu- latedtoapproachaconcentrationoftheactiveconstituentsinthe micro-fractionsproportionaltothatfoundin100g/mloftheorig- inalextract.Thecalculationwasbasedontheassumptionthateach activeconstituentmaybeelutedinoneortwo1-minfractions,and alsotheconsiderationofa50%lossthatmayoccurduringchro- matographyand re-dissolution(Potteratand Hamburger,2014).
Theplatewasshakenbyanorbitalshakerat100rpmfor30min.
Themicro-fractionsweresubmittedtoMTTbioassay.Thefinaldilu- tions(2fold)occurredinthecell-culturewells.Theexperiments wereperformedinduplicates.ThefinalcontentofDMSOineach welldidnotexceed1%.
Isolationofactiveconstituents
Phytochemical constituents of S. sahendica were purified as describedpreviously(Ebrahimietal.,2013).
Spectroscopicdataoftheconstituents
Sahandone(1):Colorless;1HNMR(500MHz,CDCl3)ı7.08(1H, d,J=7.6Hz,H-6),6.95(1H,d,J=7.3Hz,H-7),6.87(1H,s,H-12),5.48 (1H,dq,J=8.5,1.1H-3),5.01(ddd,J=13.1,8.9,4.4Hz,H-2),3.24(s, OCH3),2.95(sep,J=7.0Hz,H-15),2.68(dd,J=17.0,4.3Hz,H-1), 2.53(dd,J=17.1,11.1Hz,H␣-1),2.19(s,H-20),1.80(d,J=1.1Hz, CH3-18),1.78(d,J=1.1Hz,CH3-19),1.15(d,J=7.0Hz,CH3-16),1.14 (d,J=7.0Hz,CH3-17).13CNMR(125MHz,CDCl3)ı30.9(CH2-1), 65.4(CH-2),125.0(CH-3),136.2(C-4),136.7(C-5),130.5(CH-6), 126.4(CH-7),128.4(C-8),132.3(C-9),133.5(C-10),93.6(C-11), 135.7(CH-12),140.2(C-13),195.5(C-14),27.2(CH-15),22.1(CH3- 16),21.4(CH3-17),25.9(CH3-18),18.4(CH3-19),18.9(CH3-20), 50.3(O-CH3).
Sahandol(2):Colorless;C20H24O2;1HNMR(CDCl3,500MHz):
ı=7.53 (1H, d, J=8.4Hz, H-7), 7.27 (1H, s, H-14), 7.12 (1H, d, J=8.4Hz,H-6),5.80(1H,OH12),5.53(1H,brd,J=8.5,H-3),4.93(1H, ddd,J=10.8,8.5,3.1,H-2),3.44(1H,heptet,J=6.9,H-15),3.12(dd, J=16.4,3.1Hz,H-1),2.97(dd,J=16.4,10.8Hz,H␣-1),2.37(3H,s, H-20),1.86(3H,d,J=1.5,H-19),1.81(3H,d,J=1.5,H-18),1.37(3H, d,J=6.6Hz,H-16),1.35(3H,d,J=6.6Hz,H-17);13CNMR(CDCl3, 100.6MHz):ı=138.0(C-11),138.2(C-12),136.2(C-13),136.2(C- 4),129.2(C-5),126.5(C-7),125.3(C-10),125.1(C-6),124.5(C-8), 124.4(C-3),120.2(C-9),115.9(C-14),73.2(C-2),32.5(C-1),27.9 (C-15),25.8(C-19),22.8(C-17),22.7(C-16),18.5(C-18),18.4(C-20).
Sahandinone (3): Red crystals; 1H NMR (CDCl3, 500MHz):
ı=7.35 (1H, d, J=7.8Hz, H-6), 7.07 (1H, s, H-12), 7.03 (1H, d, J=7.8Hz,H-7), 5.29(1H,t,J=7.1,H-3), 3.08 (2H,m, H-1), 3.01 (1H,heptet,J=6.9,H-15),2.39(3H,s,H-20),2.19(2H,ddd,J=6.8, 8.7, 7.8Hz, H-2), 1.70 (3H, s, H-18), 1.60 (3H, 3, H-19), 1.17 (3H, d, J=6.9Hz, H-16), 1.19(3H, d, J=6.9Hz, H-17); 13C NMR (CDCl3,100.6MHz): ı=182.5 (C-11), 181.5 (C-14), 148.1 (C-10), 144.5(C-13),140.3(C-12),140.2(C-5),136.6(C-6),134.9(C-9), 132.8(C-4),128.5(C-8),128.0(C-7),123.8(C-3),30.2(C-1),27.5(C- 2),26.9(C-15),25.7(C-18),21.34(C-16),21.34(C-17),19.7(C-20), 17.4(C-19).
12-Deoxy-salvipisone (4): Red crystals; 1H NMR (CDCl3, 500MHz):ı=7.35(1H,d,J=7.8Hz,H-6),7.07(1H,s,H-12),7.03 (1H,d,J=7.8Hz,H-7),4.64(2H,brs,H-18),3.08(2H,m,H-1),3.01 (1H,heptet,J=6.9,H-15), 2.39(3H, s,H-20), 2.23(2H,m, H-3), 2.19(2H,ddd,J=6.8,8.7,7.8Hz,H-2),1.60(3H,3,H-19),1.17(3H, d,J=6.9Hz,H-16),1.19(3H,d,J=6.9Hz,H-17);13CNMR(CDCl3, 100.6MHz):ı=182.5(C-11),181.5(C-14),148.1(C-10),144.5(C- 13),140.3(C-12),140.2(C-5),136.6(C-6),134.9(C-9),148.4(C-4), 128.5(C-8), 128.0(C-7), 38.4(C-3),30.2 (C-1), 27.5(C-2), 26.9
(C-15),110.1(C-18),21.34(C-16),21.34(C-17),19.7(C-20),22.4 (C-19).
Proteinpreparation
Theenzymeforinsilicostudieswasselectedbasedonpreviously publisheddata(Tintorietal.,2009;PaulandMukhopadhyay,2004).
TheProteinDataBankPDBfileofkinaseATPkinaseincomplex withAP23451downloadedfromtheRCSB(2BDF)andappliedasa targetformolecularmodelingstudiesEl-Karimetal.(2015).Sub- sequently,allwatermoleculesweredeletedandhydrogenswere added.Inthenextstep,Gasteigerchargeswerecalculatedandthe createdpdbqtfilesweresavedusingAutoDocktools.Themodified PDBfilewassavedaspdbqtfileformat.
Moleculardocking
Moleculardockingwasdoneforallligandsintheworkspace ofAutoDockvinasoftware(TrottandOlson,2010).Theactivesite ATPkinasewasconsideredusingcrystallographicligandposition.
Bindingmechanismandrelatedinteractionsoffourligandswere investigatedinLigplot+(LaskowskiandSwindells,2011),Discovery StudioVisualizerv4.5.
Resultsanddiscussion
ScreeningoftheextractsfromselectedIranianmedicinalplants against humancervical cancer(HeLa) and colorectal adenocar- cinoma(Caco-2)cell-linesrevealedsignificantcytotoxicityofan hexane extract fromS. sahendica’s roots at thetest concentra- tion of 100g/ml (100% inhibition).Cytotoxicity of theextract was localized with the aid of HPLC-time-based activity profil- ing.Activityprofileofthe1-minmicro-fractionswascorrelated withthecorrespondinganalyticalHPLCchromatogramasshown inFig.1.Fractions7(Rt6–7min)and14(Rt13–14min)showed thehighest cytotoxicity in both cell-lines (>50%).Based on the high-resolution ESI-TOF-MS data,the molecularformula of the compoundsintheactivetimewindowsweresimilartothediter- penoidswhichwereisolatedfromthisplant,previously(Ebrahimi etal.,2013).Inordertofullycharacterizetheactivecompoundsand assesstheiractivityquantitatively,theirisolationatalargerscale wascarriedout.Thephytochemicalsintheactivetime-windows were purified using column chromatography. The structures wereestablishedwithHR-ESIMS,1Dand2DNMRspectroscopy, and by comparison with the published data (Ebrahimi et al., 2013).Fourabietane-typediterpenoids,sahandone(1),sahandol (2), 12-deoxy-salvipisone (3)and sahandinone (4) werefinally identified.
100 80 60
60 40
40 20
20 0
0
1 3 5 7 9 11 13 15 17 19 21 23 25 27 29
1250
1000
750
500
250
0
0 5 10 15 20 25
Time (min.)
Intens. mAUInhIbItIon (%)
A
B
C
Fig.1. HPLC-basedactivityprofilingofanhexaneextractfromrootsofSalviasahendica;thebargraphrepresentsthecytotoxicactivity(in%)ofthe1-minmicro-fractions againstHeLa(A)andCaco-2(B)cells,correlatedwiththeHPLC-UV(280nm)chromatogramoftheextract(C).
Table1
Cytotoxicactivitiesofcompounds1–4againstHeLaandCaco-2celllines.
Compound IC50±SEMa(g/ml)
HeLa Caco-2
Sahandone(1) 5.6±0.1 41.4±0.3
Sahandol(2) 8.9±0.7 >100
12-Deoxy-salvipisone(3) 19.2±6.6 29.6±2.0
Sahandinone(4) 14.2±6.9 22.9±0.6
Betulinicacid 4.3±1.2 9.2±1.2
aStandarderrorofthemean.
Cytotoxicityofthepurifiedcompounds1–4wassubsequently assessedagainst HeLa andCaco-2 cell-lines (Table1).TheHela cells were more sensitive to the tested compounds than the Caco-2 cells. Compound 1 showed the highest toxicity against Helacells(IC50=5.6±0.1),comparablewiththatofbetulinicacid (IC50=4.3±1.2).Compound2showedactiveagainsttheHeLacells butnottheCaco-2cell-line.Compounds1,3and4exhibitedmod- erateactivityagainsttheCaco-2cells.
Allisolatedcompoundsbelongtoabietanediterpenes.Despite thefactthatabietanediterpenesarepopularphytochemicalsinthe mintfamily(Lamiaceae)(Changetal.,1990;Ikeshiroetal.,1991;
Topc¸uandGören,2007;Wangetal.,2007),compounds1–3have notbeenreportedfromanyothermembersofthefamilyrather thanS.sahendica,sofar(Ebrahimietal.,2013;Jassbietal.,2006).
However,compound 4hadbeenidentified inrootsofZhumeria majdae(Rustaiyanetal.,1995).Compounds1–4werepreviously introducedasantiplasmodialandantitrypanosomalprinciplesin rootsofS.sahendica(Ebrahimietal.,2013).Sahandinone(4)hasalso shownactivityagainsthumanpancreatictumorcells(MIAPaCa-2) (Fronzaetal.,2011).12-Deoxy-salvipisone(3)and sahandinone (4)werereportedactiveagainstazygomycetesfungi,(+)Blakeslea trispora(Jassbietal.,2006).
Moleculardocking
Thedrug-likeness,molecularpropertiesandtoxicityareessen- tialassessmentsforselectionofdrugcandidatesinearlystagesof drugdiscovery.BasedonLipinski’sruleof5(Ro5),adrugmolecule shouldhaveamolecularweightof500Daorless,maximum5H- donorbondsorless,equaltoorlessthan10H-acceptorbondsand logP(octanol/waterpartitioncoefficient)notgreaterthan5.Ifa compoundhasmorethantwoviolationsofthesecriteria,itwould notprobablybeorallyactive(Lipinskietal.,1997,2012).Inthis studyrotatablebondcount(ROTB)andtopologicalpolarsurface area(tPSA)arealsoanalyzedontopofRo5requisites.Theresults ofouranalysisshowedthatthetestedcompoundssatisfythedrug- likenesscriteriaforamolecularweightbelow500Da,acceptable tPSA,andHdonor/acceptorcapabilities.
Themoleculardockingisavaluablecomputationalmethodin drugdiscovery,providingcomplementaryinformationonmodeof interactionofthebioactivecompounds.Thepossiblemechanisms ofcytotoxicityofS.sahendicacomponentsinvestigatedbyinsilico moleculardockingapproachonthekinase/ATPbindingsiteofSrc tyrosinekinase.Thisclassofenzymesregulatesgrowth,differen- tiation,relocationandapoptosisinmammaliancellsbycatalyzing terminalATPphosphatebindtospecifictyrosineresiduespresent onthetargetsubstrate(Tintorietal.,2009;PaulandMukhopad- hyay,2004).Drug-likepropertiesanddockingscoresofcompounds 1–4withSrckinaseareshowninTable2.Amongthese,compound 1possessgreaternegativebindingenergy(−9.0kcal/mol)incom- parisonwithrestofthecompounds.Thesecomputationalresults wereincompliancewiththeexperimentalvalues,andpersuaded investigationofinteractionsbetweencompound1andkinasein detail.
Several amino acids take part in hydrophobic interactions betweencompound1 andSrckinasesuchasTyr340,Leu 273, Leu 293, Val 281, Met341, Ala 293, Thr338, Ala 403, Val 323
Table2
DrugLikenessofthe1–4anddockingenergy.
Compound cLogPa H-donor H-acceptor tPSAb MWc Dockingenergy(kJ/mol)
Sahandone(1) 4.78 0.0 3 35.53 326.188 −9.0
Sahandol(2) 6.30 1.0 2.0 29.46 296.17 −8.9
Sahandinone(3) 6.35 0.0 2.0 34.14 298.15 −8.0
12-Deoxy-salvipisone(4) 6.35 0.0 2.0 34.14 298.15 −8.7
Betulinicacid 8.47 2.0 2.0 57.53 456.36 −8.1
aLogarithmofcompoundpartitioncoefficientbetweenn-octanolandwater.
bTopologicalpolarsurfacearea.
c Molecularweight.
Glu310
Asp404
Leu393 Lys295
Val323
Thr338
Ala403
Lig1
Val281
Ala293
Met341
C18
C16 C15
C13 C17
O1 O3C10
C12
C6
C11
C14 C5 C8 C9
C21 C19
C7
C20
C3 C4
C1 C2
O2
Fig.2.Dockingmodelstructureofcompounds1intotheSrctyrosinekinaseproteinbindingpocket.
andMet314.Theseresiduesplayvitalrolesinsettingthebind- ingpocketonthisprotein(Fig.2).Theclosevicinityofaminoacids suchasLeu393, Val 281andAla 293tobenzylgroupof com- pound1proposesexistenceofhydrophobicinteractionsbetween those. In addition, Met 341, Leu 393 and Ala 293 attribute in hydrophobicinteractionswiththeCH3connectedtobenzylmoi- etyoftheligand.ItisremarkablethatVal281isaversatileresidue that comprises several hydrophobic interactions withdifferent moieties (Fig. 2). Thus, it has been resolved that compound 1 canlocateinhydrophobiccavityoftheactivesiteonSrckinase (Fig.3).Theseresultsareinagreementwiththoseobservedfrom thenative ligand AP23451 (co-crystallizedligand in RCSB Pro- teinDataBank)withcommonresiduesofLeu393,Thr338,Ala 293, Met341and Lys295(Fig.3).Thenumber ofhydrophobic interactionswithresiduespresentintheactivesiteofSrckinase could bea possible reason for thepotent cytotoxic activity of compound1.
Itiscrucialtopredicttoxicityofdrug-likemoleculesinearly investigation stages. Prediction of toxicity of drug-like candi- datescanhelptoanticipatepotential“off-target”activities.Recent advancesincomputersciencesandbioinformaticsmadeitpossible
toobtainanestimatedtoxicpotential(TP).VirtualToxLabTM,isa powerfulopenaccessplatformforestimationofTPofendocrine and/or metabolicdisruption, carcinogenicity, and cardiotoxicity (Vedanietal.,2015).Itcalculatesthetoxicpotential(TP)andthe bindingaffinity(bindingconstant K)ofanymoleculetosixteen proteins: 10 receptors (androgen, estrogen ␣, estrogen , glu- cocorticoid,liverX,mineralocorticoid,progesterone,peroxisome proliferator-activatedreceptorc(PPARc),thyroidaandthyroidb), fourmembersofthecytochromeP450enzymefamily(1A2,2C9, 2D6and3A4),onetranscriptionfactor(arylhydrocarbonreceptor) andonepotassiumionchannel(hERG).Theisolatedcomponents andstandardcompoundsinthisstudywereevaluatedtoward16 targetproteins.Thetoxicpotential(TP)ofcompoundswerecalcu- latedbynormalizedbindingaffinitiesandthevaluesrangingfrom0 (none)to1(extreme).ThecalculatedTPvaluesfor1–4wasbetween 0.45and0.59,showingamoderatetohighriskofbindingtothe receptors(Table3).Themaintargetfor1–4wasthePPAR␥receptor withbindingaffinityvalues663,338,25and136nM,respectively, whereallcompoundsshowednobindingtocytochromereceptors.
ThepredictionsshowedthesecompoundsmightalsobindtoGR, ARandTRreceptors.
VAL281
LEU273
THR340
MET314
ALA403 VAL323
Hydrophobicity 3.00 2.00 1.00 0.00 -1.00 -2.00 -3.00
Fig.3.Bindingmodelof1intoactivepocketofSrctyrosinekinase.
Table3
VirtualToxLabTM.Bindingaffinityprofile(bindingconstantK)andestimatedtoxicpotential(TP)ofBPA,BPF,BPS,Pergafast®201andD-8.Thelowertheconcentration,the strongerthebindingaffinitytothetargetprotein.BindingaffinityQ4>100Mareconsiderednotbinding.
Receptor Sahandone(1) Sahandol(2) Sahandinone(3) 12-Deoxy-salvipisone(4) Betulinicacid
Androgenreceptor 0.89M 3.65M 0.92M 0.07M 1.74M
Arylhydrocarbonreceptor 0.29M 5.57M 0.51M 0.43M 23.20M
CYP4501A2 NB NB 6.89M 23.90M 90.6M
CYP4502C9 NB NB 41.00M NB 44.40M
CYP4502D6 33.20M 6.43M 2.54M 25.80M 0.06M
CYP4503A4 63.7M NB 8.82M 6.73M 0.06M
Estrogenreceptor␣ 1.42M 3.69M 2.07M 2.52M 0.04M
Estrogenreceptor 1.68M 1.28M 1.30M 1.43M 0.02M
Glucocorticoidreceptor 0.45M 3.7M 0.06M 0.13M 1.09M
hERG 2.67M 0.30M 0.73M 0.36M 0.03M
LiverXreceptor 1.62M 10.30M 2.23M 0.66M 0.62M
Mineralocorticoidreceptor 1.62M 3.33M 1.40M 0.21M 0.03M
PPAR␥ 0.66M 0.34M 0.03M 0.14M 0.02M
Progesterone 0.90M 0.26M 0.74M 0.20M 0.29M
Thyroidreceptor␣ 6.14M 32.6M 0.36M 0.16M 1.97M
Thyroidreceptor␥ 1.10M 0.06M 1.01M 0.61M 13.7M
Toxicpotential 0.45 0.55 0.59 0.58 0.60
TP60.3(low),0.3<TP60.6(moderate),andTP>0.6(high).
Ethicaldisclosures
Protectionofhumanandanimalsubjects. Theauthorsdeclare thatnoexperimentswereperformedonhumansoranimalsfor thisstudy.
Confidentialityofdata. Theauthorsdeclarethatnopatientdata appearinthisarticle.
Righttoprivacyandinformedconsent. Theauthorsdeclarethat nopatientdataappearinthisarticle.
Authors’contributions
FMF,MS,FMandGGBparticipatedintheevaluationofcyto- toxicityactivity,acquisitionandinterpretationofdata.FMS and SNEcarriedoutphytochemicalproceduresandanalysis.RZcarried outmolecularmodelingpart.Alltheauthorshavecontributedto criticalreadingofthefinalmanuscriptandapproveditssubmission.
Conflictsofinterest
Theauthorsdeclarenoconflictsofinterest.
Acknowledgments
TheNMRspectraweremeasuredinDivisionofPharmaceutical Biology,UniversityofBasel,andtheauthorswouldliketothank Prof.M.Hamburgerforhiskindcooperation.Thefinancialsupport ofthestudywasfoundedbytheResearchCouncilofMazandaran UniversityofMedicalSciences,andShahidBeheshtiUniversity.
AppendixA. Supplementarydata
Supplementarydataassociatedwiththisarticlecanbefound,in theonlineversion,atdoi:10.1016/j.bjp.2017.11.007.
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