genome analysis
Barcode server: a visualization-based genome analysis system.
... of genome barcodes are currently being carried out in our lab, focused on, for example, (i) prediction of the relative residential time among predicted horizontally transferred genes in a host genome, (ii) ...
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Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii.
... sequence analysis [3]. However, the Halanaerobiales is a basal Firmicutes lineage that has been proposed may represent an independent phylum [5]. This suggestion was based on inconsis- tent support of Firmicutes ...
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Genome analysis of yellow fever virus of the ongoing outbreak in Brazil reveals polymorphisms
... a genome of approximately 11 ...Phylogenetic analysis provided evidence that the YFV circulating in the Americas is derived from a Western African lineage ancestor that emerged in Afri- ca and was imported ...
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Sequencing and comparative genome analysis of two pathogenic Streptococcus gallolyticus subspecies: genome plasticity, adaptation and virulence.
... of genome plasticity in ATCC 43143 and ATCC 43144 ...The genome heterogeneity and genetic diversity among the two biotypes, especially membrane and lipoproteins, most likely contribute to the differences in ...
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Genome analysis and phylogenetic relatedness of Gallibacterium anatis strains from poultry.
... For analysis of the shared and unique proteins in ...whole genome alignments were performed using MAUVE to identify regions present in strain UMN179 but absent from strains F149 T and/or 12656-12 ...
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Population structure of Neisseria gonorrhoeae based on whole genome data and its relationship with antibiotic resistance
... the genome to elucidate underlying mechanisms of antibiotic resistance (Hagman & Shafer, 1995; Lindberg et ...Extensive genome sequencing studies have yet to be conducted on a diverse collection of ...
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Analysis of pharmacogenomic variants associated with population differentiation.
... (GO) analysis and pathway analysis. Using all genes in the human genome as the background, the GO analysis and pathway analysis of the HD genes identified terms related to cell ...
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CARACTERIZAÇÃO MOLECULAR DE VÍRUS DO DENGUE SOROTIPO-1 E DESENVOLVIMENTO DE cDNA INFECCIOSO SANDRA ELISA DE SOUSA CARVALHO
... Easter Island and one sequence from South East Asia (D1/SG/05K4173DK1/2005 used as an outgroup; Genbank accession number EU081262; Supplementary Table 1) were obtained from GenBank and aligned with ClustalW using default ...
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Castor bean organelle genome sequencing and worldwide genetic diversity analysis.
... chloroplast genome sequencing [17,18]. If a reference chloroplast genome from a related species is available, primers can be designed to amplify multiple PCR fragments to cover and assemble the whole ...
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Genome-wide transcription analysis of clinal genetic variation in Drosophila.
... The clinal expression variation of srp might be caused by nearby DNA sequence variation. To investigate this, we sequenced 59 flanking and N terminal regions of the srp gene in 96 isofemale lines originating from six ...
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On the analysis of genome-wide association studies in family-based designs: a universal, robust analysis approach and an application to four genome-wide association studies.
... for genome-wide association studies that combines all sources of information about association, the between and the within-family information, into one single test ...independent, genome-wide association ...
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Rev. Soc. Bras. Med. Trop. vol.37 número2
... data o f the B MT and RT patie nts was o b se r ve d. Ho we ve r, B MT patients having CMV loads higher than 1 0 0 0 0 CMV partic les/ µ g DNA sho we d 1 0 0 % spe c ific ity and 1 0 0 % po sitive pr e dic tive va lue r ...
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Novel susceptibility locus at 22q11 for diabetic nephropathy in type 1 diabetes.
... In addition to these three susceptibility loci, we identified in each population other possible DN loci. In the French sample two susceptibility regions were found on chromosome 9. The susceptibility region on 9p21.3 has ...
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A search for RNA insertions and NS3 gene duplication in the genome of cytopathic isolates of bovine viral diarrhea virus
... Calves born persistently infected with non-cytopathic bovine viral diarrhea virus (ncpBVDV) frequently develop a fatal gastroenteric illness called mucosal disease. Both the original virus (ncpBVDV) and an antigenically ...
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Utilização de técnicas citogenéticas, de citometria de fluxo e de imagem para caracterização do genoma de Coffea canephora e C. arabica
... The application of cytogenetic, flow and image cytometric techniques has been enabling the genome characterization of Coffea arabica L. and Coffea canephora Pierre ex Froehner. These approaches have been providing ...
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A genome-wide longitudinal transcriptome analysis of the aging model Podospora anserina.
... the terms ‘‘metal ion transport’’ and ‘‘cis-trans isomerases’’ (Figure 4). In the first category, the gene encoding the high affinity copper transporter CTR3 was found, which is regulated by the copper-sensing and ...
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Genome-wide association analysis of oxidative stress resistance in Drosophila melanogaster.
... Recently, a population of inbred wild-derived lines comprising the D. melanogaster Genetic Reference Panel (DGRP), derived from the Raleigh, North Carolina population, has been fully sequenced [28]. The DGRP affords the ...
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Genome-wide DNA methylation patterns and transcription analysis in sheep muscle.
... remainding 20 m l of bisulfite treated DNA was amplified for 15–20 PCR cycles in four 100 m l reaction volumes. PCR reactions for were purified using Clean and concentrator -5 column (Zymo CA, USA), analyzed on a ...
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Genome-wide linkage analysis of malaria infection intensity and mild disease.
... linkage analysis (NPL) and Haseman- Elston multipoint linkage analysis (HE) were applied (Figure ...data analysis, including the use of a raw phenotype without adjustments for covariates (z score of ...
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A genome-wide analysis of promoter-mediated phenotypic noise in Escherichia coli.
... Figure 1. Dependence of variation in mRNA expression on mean mRNA expression level and derivation of a noise metric. A. The observed variance in mRNA expression increases with increasing mean expression level. Shown are ...
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