Neighbor joining
Estudo da diversidade morfológica e molecular de Ganoderma spp (Ganodermataceae) e do complexo taxonômico Phellinus piptadeniae (Hymenochaetaceae)
... (Neighbor Joining) que, todavia são mais matemáticas que evolutivas, trouxeram informações significativas: houve o arranjo de três clados fortemente sustentados pelos valores de bootstrap, sendo que um ...
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Origin and diversification of TRIM ubiquitin ligases.
... To generate a comprehensive database of TRIM proteins, Tblastn searches were performed, using multiple representative TRIM family sequences as queries and with default parameters, against the non-redundant, htgs, gss, ...
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Caracterização molecular de Dengue tipo 3 isolados no Brasil e no Paraguai
... Árvore filogenética usando o método de Neighbor-joining com base na sequência do gene da proteína NS4a de 268 isolados de DENV-3 --- 29.. Figura 10.[r] ...
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Karine Frehner Kavalco1 , Karina de Oliveira Brandão2 , Rubens Pazza1 and Lurdes Foresti de Almeida-Toledo2
... The ancestral karyotype within the genus Astyanax was most probably composed of 2n = 50 chromosomes (6M, 22SM, 10ST and 12A), since it is found at the base of neighbor-joining dendrograms based on ...
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Characterization of partial Hox gene sequences in annual fish of the
... The alignment of the HD sequences from the PG1 group reveals that two of these residues reside in two different Austrolebias species, Figure 2 - Neighbor-joining tree using partial homeo[r] ...
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A novel third complement component C3 gene of Ciona intestinalis expressed in the endoderm at the early developmental stages
... Fig. 1 Phylogenetic tree of TEP family members constructed by the Neighbor-Joining method using the entire amino acid sequences. Bootstrap values higher than 50 % are indicated in the tree. Accession ...
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Genetic diversity assessment of portuguese cultivated Vicia faba L. through IRAP markers
... Abstract: Faba bean have been grown in Portugal for a long time and locally adapted populations are still maintained on farm. The genetic diversity of four Portuguese faba bean populations that are still cultivated in ...
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Genetic diversity assessment of portuguese cultivated Vicia faba L. through IRAP markers
... Abstract: Faba bean have been grown in Portugal for a long time and locally adapted populations are still maintained on farm. The genetic diversity of four Portuguese faba bean populations that are still cultivated in ...
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Exploring Genetic Divergence in a Species-Rich Insect Genus Using 2790 DNA Barcodes.
... of neighbor joining [40] ID-trees perhaps represents the most widely used method for the direct comparison of DNA ...general, neighbor joining trees are easy and fast to compute with ...
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GENETIC DIVERSITY OF RHIZOBIA ISOLATES FROM AMAZON SOILS USING COWPEA (VIGNA UNGUICULATA) AS TRAP PLANT Silva, F.V.1 ; Simões-Araújo, J.L.2 ; Silva Júnior, J.P.3 ; Xavier, G.R.2 ; Rumjanek, N.G.2
... Figure 2: Neighbor-joining tree obtained using Kimura-2-parameter distances based on 16S rRNA sequences data of fast-growing isolates from Amazon soils and rhizobia reference strains..[r] ...
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Unique β-Glucuronidase Locus in Gut Microbiomes of Crohn's Disease Patients and Unaffected First-Degree Relatives.
... searching homologs in published genomes (see S3 Table). All protein sequences were aligned using Expresso (3D Coffee) and a Neighbor-Joining tree was performed using MEGA 5.5. Groups are proposed for ...
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María Cecilia Bruno1 , Jorge Rafael Casciotta 2,3 , Adriana Edith Almirón2 and Marta Susana Lizarralde1
... Fig. Distance tree obtained by Neighbor-Joining method based on mitochondrial DNA control region of Jenynsia multidentata. Numbers under the nodes represents the Boot- strap values. The [r] ...
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B Parra-Ortega, H Cruz-Torres, L Villa-Tanaca, C Hernández-Rodríguez+
... 2: neighbor-joining phylogenetic tree of secreted aspartyl proteinases (Saps) superfamily of opportunistic pathogenic Candida species.. CTG clade, yeast that encodes CTG as serine ins[r] ...
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Cytogenetics and DNA barcoding of the Round-eared bats, Tonatia (Chiroptera: Phyllostomidae): a new karyotype for Tonatia bidens
... Neighbor-joining (NJ) dendogram describing relation- ships among genera of bats in Phyllostominae and calculated from COI sequence data (the species of Tonatia are highlighted). The be[r] ...
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CARACTERIZAÇÃO MORFOLÓGICA, MOLECULAR E PATOGENICIDADE DE Fusarium acuminatum E Fusarium verticillioides A Cordia americana.
... FIGURA 6: Dendrograma baseado no método Neighbor-joining derivado das sequências da região ITS1- 5.8S-ITS2 do rDNA, com base em 1000 réplicas de bootstrap, dos isolados F2CW, F3CW e F4C[r] ...
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Diversidade genética de Rhizoctonia spp. e análise de sequência multilocos
... Os fragmentos seqüenciados gerados pelos dois “primers” de cada isolado foram montados utilizando o programa computacional SeqMan version 5.03 (DNAStar, Madison, WI, U.S.A) e corrigidos manualmente. As seqüências ...
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Acácio Aparecido Navarrete (2) , Rodrigo Gouvêa Taketani (3) , Lucas William Mendes (4) , Fabiana de Souza Cannavan (2) , Fatima Maria de Souza Moreira
... Selected DGGE bands were excised, macerated in sterile water and subjected to a further PCR amplification using primers 340F and 519R (∅vreås et al., 1997). The new PCR products were purified with GFX PCR DNA and the Gel ...
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Rev. Soc. Bras. Med. Trop. vol.46 número2
... (Applied Biosystems, Foster City, CA, USA). Sequence data was aligned and edited with the BioEdit Sequence Alignment Editor (version 7.0.5.2) software (Ibis Therapeutics, Carlsbad, CA). A genetic tree was constructed ...
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Distribution of mosquitoes in the south east of Argentina and first report on the analysis based on 18S rDNA and COI sequences.
... and Neighbor-Joining trees based on the information given by mosquito 18S rDNA sequences resulted in very similar trees, with slight differences in the position of species within each genus (Figure 3A and ...
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Isolation and sequencing of doublesexmale abnormal 3 (DM) related transcription factor ( Dmrt ) genes from the Asian toad Bufo gargarizans
... Caenorhabditis elegans F10C1.5, suggesting that both the Dmrt2 and Dmrt4/Dmrt5 groups are ancient because they both contain invertebrate sequences. Ottolenghi et al. (2002) used structural analysis to show that the human ...
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