Protein coding sequences
Biological basis of miRNA action when their targets are located in human protein coding region.
... viral protein coding ...human protein coding sequences, we have observed reduced translation efficiency is selectively preferred near miRNA target ...
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Mining the genome for ‘known unknowns’
... from protein- coding sequences of a fasta-formatted file that the user inputs, these are compared to a target sequence of the user’s ...the sequences, returning a Logp value for each ORF ...
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Patterns of sequence divergence and evolution of the S orthologous regions between Asian and African cultivated rice species.
... stimulus, protein modification, signal transduc- tion and response to endogenous stimulus; and into the ‘‘molecular function’’ categories: kinase activity, nucleotide binding, protein binding, transferase ...
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Complete Chloroplast Genome of Tanaecium tetragonolobum: The First Bignoniaceae Plastome.
... of protein-coding sequences A comparison of base substitutions in the chloroplast genomes of Boea hygrometrica, Olea europaea, Sesamum indicum, and Tanaecium tetragonolobum was conduced and the ...
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The mitochondrial genome of Paramphistomum cervi (Digenea), the first representative for the family Paramphistomidae.
... nucleotide sequences of the 12 protein-coding genes is shown in ...amino-acid sequences (only species within the Plagiorchiida are shown: the tree for the members of the Diplostomida was ...
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Disparity compensation using geometric transforms
... for coding multiple ...uses coding tools specific to depth maps where sharp edges and large homogeneous areas are ...exclusive coding tools, since inter-view prediction is also used by ...
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Evolutionary insight into the functional amyloids of the pseudomonads.
... Functional bacterial amyloids (FuBA) represent an interesting class of very stable fibrillar protein polymers, in which the monomeric subunits fold as β-strands stacked perpendicular to the fibril axis [1,2]. ...
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Rapid dopaminergic modulation of the fish hypothalamic transcriptome and proteome.
... nucleotide sequences represented on the microarray were compared (BLASTx) to this differentially-expressed protein ...binding protein for D2), while others are inversely correlated (for example, ...
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The evolutionary value of recombination is constrained by genome modularity.
... in coding regions presumably depended on their inheritance of sequences that did not overly disrupt either intraprotein or intergene/intergenic region interaction networks; survival of natural intergenic ...
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Global assessment of genomic regions required for growth in Mycobacterium tuberculosis.
... Instead of assessing the requirement for growth of genomic regions based on predetermined gene coordinates, we divided the genome into contiguous overlapping windows to assess a comprehensive set of potential functional ...
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Orientador: Rui Manuel Freitas Oliveira, Professor Associado, FCT-UNL Co-orientador: Anton Glieder, Professor, IMB-TU Graz
... optimize protein levels of regulators or metabolic ...promoter sequences were designed based on the sequence/function relationship of natural core promoters, nucleosome occupancy and the presence of short ...
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Transimulation - protein biosynthesis web service.
... and protein production rate, cannot be compared with experimental studies, because no such studies exist or are available only for a very limited set of ...or protein levels, performed by several groups ...
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A human-specific de novo protein-coding gene associated with human brain functions.
... However, protein-coding potential of FLJ33706 suggested by population genetics analysis was still not ...194-codon protein, we developed FLJ33706-specific antibody and performed Western blot ...
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Genotyping by Sequencing Using Specific Allelic Capture to Build a High-Density Genetic Map of Durum Wheat.
... RNA was extracted and purified for the two parents of the DS population and 18,899 SNPs were detected using the protocol of [24]. In brief, sequencing was carried out using the Illumina mRNA-Seq paired-end indexed ...
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Interspecific sex in grass smuts and the genetic diversity of their pheromone-receptor system.
... gene coding for a novel protein with a mitochondrial targeting signal, our data strongly suggest a more complex or even species-specific mechanism of mitochondrial inheritance in grass smuts, involving ...
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The miRNA biogenesis in marine bivalves
... related protein interactions, are well known in mammals (Lau & MacRae, 2009), and also in other metazoans like Cnidaria (Moran et ...DICER sequences for phylogenetic analysis (Gao et ...
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Caracterização clínica e estudo do gene WFS1 na síndrome de Wolfram
... Wolfram Syndrome (WS) is an autosomal recessive progressive neurodegenerative disorder characterized by diabetes mellitus and optic atrophy. Diabetes insipidus and sensorineural deafness are also noted frequently, ...
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Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core.
... The chromosomes of the twelve genomes of E. amylovora compared in this study are all approximately 3.8 Mb. The Spiraeoideae-infecting strains and ATCC BAA-2158 have an average G+C content of 53.6% and the Rubus-infecting ...
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Design, Construction, and Analysis of Specific Zinc Finger
... reorganization sequences in target sites ranged from 4 bp to 6 bp was successful and effective to be cut by ZFNs in vitro (Bibikova ...acid sequences of ZFPs which should be converted ...
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A second endolysin gene is fully embedded in-frame with the lysA gene of mycobacteriophage Ms6.
... out. Coding sequences entirely encompassed within other genes seem to be very rare among dsDNA bacteriophages: lrz and rz1 represent an example of two genes located in different reading frames in the same ...
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