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protein structure

Potentials of mean force for protein structure prediction vindicated, formalized and generalized.

Potentials of mean force for protein structure prediction vindicated, formalized and generalized.

... Understanding protein structure is of crucial importance in science, medicine and ...of protein structure and the simulation of protein ...of protein structure; and it ...

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Building a better fragment library for de novo protein structure prediction.

Building a better fragment library for de novo protein structure prediction.

... secondary structure scores and fragment RMSD to the native structure was also ...secondary structure in assisting protein structure predic- tion ...from protein threading hits ...

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Effects of NMR spectral resolution on protein structure calculation.

Effects of NMR spectral resolution on protein structure calculation.

... the structure calculation of one protein at one resolution usually takes about one to two ...sized protein molecules ...and structure calculations using distance restraints from the modeled ...

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Optimized null model for protein structure networks.

Optimized null model for protein structure networks.

... of protein structures with residues as nodes and inter-residue interactions as ...of protein structures and their network ...diverse protein data set at various distance cut-offs and for different ...

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Mining Protein Structure Data

Mining Protein Structure Data

... To load the set of CSV files to the ProteinsDB, we have used the SQL Server 2005 command line utility, BCP (Bulk Copy Program), which is quite efficient. To make the loading more efficient we have also turned off the ...

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PROTEIN STRUCTURE, RECEPTORS AND TRANSLOCATION ROUTES

PROTEIN STRUCTURE, RECEPTORS AND TRANSLOCATION ROUTES

... From an ecological point of view, colicins are anticompetitor molecules (23). Although research on colicins has generated a wealth of information in terms of molecular genetics, mode of action and application, little is ...

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Dissertation for the Master degree in Biochemistry for Health Supervisor: Margarida Archer Frazão Co-supervisors: Ana Lúcia Rosário, José Artur Brito

Dissertation for the Master degree in Biochemistry for Health Supervisor: Margarida Archer Frazão Co-supervisors: Ana Lúcia Rosário, José Artur Brito

... Protein structure and function studies require large quantities of pure ...target protein, recombinant DNA technology is ...recombinant protein expression, plasmids are the most commonly used ...

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Variation of structures of ingredients of desiccated coconut during hydrolysis by hydrochloric acid at low temperature

Variation of structures of ingredients of desiccated coconut during hydrolysis by hydrochloric acid at low temperature

... the protein secondary structure for DDC, DDC-1, and DDC- are shown in Figure 6 and Table ...the protein main chain was strengthened after ...the protein structure become more stable ...

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Diversity of T cell epitopes in Plasmodium falciparum circumsporozoite protein likely due to protein-protein interactions.

Diversity of T cell epitopes in Plasmodium falciparum circumsporozoite protein likely due to protein-protein interactions.

... Taken together, our results suggest that the patterns of diversity within the T cell epitopes within the TSR domain of CS are in part determined by the relative location of polymorphic amino acids within the intact ...

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"SP-G", a putative new surfactant protein--tissue localization and 3D structure.

"SP-G", a putative new surfactant protein--tissue localization and 3D structure.

... length protein sequence (including the N-terminal 19 amino acid signal peptide) was used for the protein model generation because there are no data available which indicate in which form SP-G is present at ...

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An Algebro-topological description of protein domain structure.

An Algebro-topological description of protein domain structure.

... possible protein structures appears vast and continuous, and the relationship between primary, secondary and tertiary structure levels is ...complex. Protein structure comparison and ...

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J. Bras. Patol. Med. Lab.  vol.52 número5

J. Bras. Patol. Med. Lab. vol.52 número5

... on protein molecular modeling of genetic markers for thyroid ...the Protein Data Bank sequence and the basic local alignment search tool (BLAST) ...automated protein structure ...

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Protein docking by the interface structure similarity: how much structure is needed?

Protein docking by the interface structure similarity: how much structure is needed?

... secondary structure elements as the cutoff value ...first protein in the complex (blue ribbons in Figure 1) largely consists of two a-helixes (residues G161–S184 and H18–Y28) interacting with b-sheet ...

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Predicting and validating protein interactions using network structure.

Predicting and validating protein interactions using network structure.

... Validation of experimental interactions using the triangle rate score. We can also consider the converse, using the triangle rate score to validate a stated interaction, with the aim to identify potentially false ...

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IDENTIFICATION OF PHARMACOLOGICAL TARGETS COMBINING DOCKING AND MOLECULAR DYNAMICS SIMULATIONS

IDENTIFICATION OF PHARMACOLOGICAL TARGETS COMBINING DOCKING AND MOLECULAR DYNAMICS SIMULATIONS

... Studies that include both experimental data and computational simulations (in silico) have increased in number because the techniques are complementary. In silico methodologies are currently an essential component of ...

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In silico analysis identifies a C3HC4-RING finger domain of a putative E3 ubiquitin-protein ligase located at the C-terminus of a polyglutamine-containing protein

In silico analysis identifies a C3HC4-RING finger domain of a putative E3 ubiquitin-protein ligase located at the C-terminus of a polyglutamine-containing protein

... 1IYM structure (22), which showed the highest sequence homology with the query (23% after manual editing, Table 1), was used as a rigid scaffold for the main part of the ...

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Exploring overlapping functional units with various structure in protein interaction networks.

Exploring overlapping functional units with various structure in protein interaction networks.

... in protein-protein interaction (PPI) networks are important for understanding cellular functional ...cohesive protein complexes which have more internal interactions than external ...a protein ...

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DNA structure modulates the oligomerization properties of the AAV initiator protein Rep68.

DNA structure modulates the oligomerization properties of the AAV initiator protein Rep68.

... proposed structure might have implications for our current replication model, the exact role of a double-octameric Rep68 in AAV DNA replication and/or site-specific integration remains to be deter- ...

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Natureza recombinante e propriedades patogênicas do DNA-A do begomovírus ToCMV-[MG-Bt1]

Natureza recombinante e propriedades patogênicas do DNA-A do begomovírus ToCMV-[MG-Bt1]

... replication by the replicator initiator protein of tomato yellow leaf curl virus. Geminiviruses: genome structure and gene function[r] ...

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Structure of beta-cinnamomin, a protein toxic to some plant species

Structure of beta-cinnamomin, a protein toxic to some plant species

... A scan of the PIR-NREF database (Barker et al., 2001) against the -cinnamomin sequence matched 32 sequences with signi®cant homology scores, 26 of which are unique. The sequences were aligned with the multiple alignment ...

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