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Whole Genome Sequencing

The "most wanted" taxa from the human microbiome for whole genome sequencing.

The "most wanted" taxa from the human microbiome for whole genome sequencing.

... been whole-genome sequenced have an equal or better match in the databases of cultured ...microbial whole-genome sequencing that are dependent on culturing; while not every taxon with ...

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Genomic view of bipolar disorder revealed by whole genome sequencing in a genetic isolate.

Genomic view of bipolar disorder revealed by whole genome sequencing in a genetic isolate.

... obtained whole genome sequences (WGS) for 50 individuals comprising 18 parent-child trios and 8 additional parent-child pairs from the extended pedigree (Figure ...for whole genome ...

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Identification of Salmonella for public health surveillance using whole genome sequencing

Identification of Salmonella for public health surveillance using whole genome sequencing

... in whole genome sequencing (WGS) methodologies have resulted in the ability to perform high throughput sequencing of bacterial genomes at low cost making WGS an economically viable alternative ...

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Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study.

Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study.

... bacterial genome (blueprint), but because these methods examine only a small part of the genome, they may not distinguish between related transmission ...of whole genome sequencing ...

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Examination of Mycobacterium avium subspecies paratuberculosis mixed genotype infections in dairy animals using a whole genome sequencing approach

Examination of Mycobacterium avium subspecies paratuberculosis mixed genotype infections in dairy animals using a whole genome sequencing approach

... strains. Whole genome sequencing (WGS) offers a rapid and more precise tool for investigating infectious disease epidemiology compared to the traditionally used methods (Eyre et ...

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Identifying Likely Transmission Pathways within a 10-Year Community Outbreak of Tuberculosis by High-Depth Whole Genome Sequencing.

Identifying Likely Transmission Pathways within a 10-Year Community Outbreak of Tuberculosis by High-Depth Whole Genome Sequencing.

... In total 23 patient isolates were identified with identical MIRU-24 loci and spoligotype (MIRU-12: 23’3425153322; MIRU-24: 242324223342; spoligotype: 777737777740371). The isolate from the earliest clinical case ...

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Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica.

Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica.

... essential. Whole genome sequencing (WGS) shows great promises for using as a routine epidemiological typing ...and whole genome sequencing ...

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Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing.

Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing.

... study, whole genome sequencing data revealed that strains of ...on whole genome sequencing data by Fricke et ...on whole genome sequencing data provided a ...

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Insights into the genetic structure and diversity of 38 South Asian Indians from deep whole-genome sequencing.

Insights into the genetic structure and diversity of 38 South Asian Indians from deep whole-genome sequencing.

... perform whole-genome sequencing from two independent Institutional Review Boards at the National University Hospital (Singapore) and the National University of Singapore ...

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Fast homozygosity mapping and identification of a zebrafish ENU-induced mutation by whole-genome sequencing.

Fast homozygosity mapping and identification of a zebrafish ENU-induced mutation by whole-genome sequencing.

... high-throughput sequencing of the whole zebrafish genome can directly locate the interval carrying the causative mutation and at the same time pinpoint the molecular ...by sequencing the m1045 ...

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Deep Whole-Genome Sequencing to Detect Mixed Infection of Mycobacterium tuberculosis.

Deep Whole-Genome Sequencing to Detect Mixed Infection of Mycobacterium tuberculosis.

... Deep whole-genome sequencing (WGS) has been proved highly sensitive and discrimina- tive for studying population heterogeneity of ...the sequencing depth of minor strains was as low as 1× ...

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Microbiota present in cystic fibrosis lungs as revealed by whole genome sequencing.

Microbiota present in cystic fibrosis lungs as revealed by whole genome sequencing.

... explored whole genome sequencing (WGS) using the Illumina high-throughput technology applied directly to DNA extracted from sputa obtained from two cystic fibrosis ...to whole DNA ...

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Whole genome sequencing of mutation accumulation lines reveals a low mutation rate in the social amoeba Dictyostelium discoideum.

Whole genome sequencing of mutation accumulation lines reveals a low mutation rate in the social amoeba Dictyostelium discoideum.

... We combined an MA experiment and whole-genome sequenc- ing to estimate the spontaneous single nucleotide mutation rate in the social amoeba Dictyostelium discoideum. This haploid eukaryote is a model system ...

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Digital Droplet Multiple Displacement Amplification (ddMDA) for Whole Genome Sequencing of Limited DNA Samples.

Digital Droplet Multiple Displacement Amplification (ddMDA) for Whole Genome Sequencing of Limited DNA Samples.

... isothermal method using random primers and the strand-displacing ϕ29 DNA polymerase for high yield, high fidelity amplification [10–12]. The ϕ29 polymerase has an error rate at least one order of magnitude lower than ...

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The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs

The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs

... Sanger sequencing for inhA, katG, tlyA, eis, gidB, pncA, gyrA, ethA, embB, embC-embA, rpsL, folC and thyX genes (see Additional file 2: Table S1 for the primers ...

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Whole genome sequencing and evolutionary analysis of human respiratory syncytial virus A and B from Milwaukee, WI 1998-2010.

Whole genome sequencing and evolutionary analysis of human respiratory syncytial virus A and B from Milwaukee, WI 1998-2010.

... A similar situation can be described in our community with the strains A/WI/629-3/06-07 and A/WI/629-9/06-07 isolated during the 2006/2007 season and which belong to the same lineage (GA1) as the prototype strain A2 ...

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Plantagora: modeling whole genome sequencing and assembly of plant genomes.

Plantagora: modeling whole genome sequencing and assembly of plant genomes.

... The whole process was run with a perl script, ...the genome identified in ...(reference genome) (assembly sequences) (gff file) ...The genome regions analyzed were: the whole ...

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SOLiD™ sequencing of genomes of clinical isolates of Leishmania donovani from India confirm leptomonas co-infection and raise some key questions.

SOLiD™ sequencing of genomes of clinical isolates of Leishmania donovani from India confirm leptomonas co-infection and raise some key questions.

... gene sequencing, it has been reported [20] that 7% isolates of Kala Azar were similar to Leptomonas sp in Bihar ...gene sequencing is not the absolute indication of correct detection of Leptomonas ...by ...

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Identifying Human Genome-Wide CNV, LOH and UPD by Targeted Sequencing of Selected Regions.

Identifying Human Genome-Wide CNV, LOH and UPD by Targeted Sequencing of Selected Regions.

... on whole-genome sequencing (WGS) require very high depth of coverage on the whole genome scale, and are cost-wise ...approach, whole exome ge- nome sequencing (WEGS), is ...

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Advances in Cryptococcus genomics: insights into the evolution of pathogenesis

Advances in Cryptococcus genomics: insights into the evolution of pathogenesis

... gattii. Whole genome sequencing of representatives of both species resulted in reference assemblies enabling a wide array of downstream studies and genomic ...of whole genome ...

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