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[PDF] Top 20 Assessing pseudogene expression during neural differentiation by RNA-Seq

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Assessing pseudogene expression during neural differentiation by RNA-Seq

Assessing pseudogene expression during neural differentiation by RNA-Seq

... O primeiro pseudogene foi descoberto em 1977, coincidindo com o aparecimento da primeira técnica de sequenciação. O desenvolvimento das tecnologias de NGS, bem como a redução de custo das mesmas, têm permitido que ... See full document

55

Network Analysis for the Identification of Differentially Expressed Hub Genes Using Myogenin Knock-down Muscle Satellite Cells.

Network Analysis for the Identification of Differentially Expressed Hub Genes Using Myogenin Knock-down Muscle Satellite Cells.

... altered expression patterns during skeletal muscle differentiation [5, ...with RNA-Seq [29] studies have improved our knowl- edge of myogenesis by identifying diverse types of ... See full document

19

High-resolution transcriptome of human macrophages.

High-resolution transcriptome of human macrophages.

... differential expression using RNA-seq might lead to an improved resolution in comparison to array-based ...macrophages by RNA-seq, while 834 genes were recognized by array ... See full document

16

Long Noncoding RNA Expression during Human B-Cell Development.

Long Noncoding RNA Expression during Human B-Cell Development.

... lncRNA expression during human B-cell development by array-based expression profiling of eleven distinct flow-sorted B-cell subsets, comprising pre-B1, pre- B2, immature, naive, memory, and ... See full document

19

FTH1P3, a Novel H-Ferritin Pseudogene Transcriptionally Active, Is Ubiquitously Expressed and Regulated during Cell Differentiation.

FTH1P3, a Novel H-Ferritin Pseudogene Transcriptionally Active, Is Ubiquitously Expressed and Regulated during Cell Differentiation.

... “provisional RNA sequence”, thus suggesting that it might be ...its expression levels and cell/tissue speci- ficity are ...tissues by means of reverse-transcription PCR and ... See full document

14

RNA-SEQ applied to the peacock blenny Salaria pavo: unveiling the gene networks and signalling pathways behind phenotypic plasticity in a littoral fish

RNA-SEQ applied to the peacock blenny Salaria pavo: unveiling the gene networks and signalling pathways behind phenotypic plasticity in a littoral fish

... conditions, during mid- morning when the tide was ...that RNA degradation is minimal for PMIs of several hours ...possible by keeping the target tissues in their natural conditions, enclosed within ... See full document

308

Neural induction from ES cells portrays default commitment but instructive maturation.

Neural induction from ES cells portrays default commitment but instructive maturation.

... the neural fate, we stained the cells with neural stem cell/progenitor markers such as Sox1, Sox2 and nestin both prior to and after inducing ...for neural committed population [19] was detected ... See full document

15

Genome-wide analysis reveals the unique stem cell identity of human amniocytes.

Genome-wide analysis reveals the unique stem cell identity of human amniocytes.

... Figure 1. Amniocytes have properties of pluripotent stem cells. (A–E) Confocal images of amniocytes immunostained (green) for transcription factors as indicated. Hoechst dye was used to label nuclei (cyan-colored insets) ... See full document

16

Evaluation of skin expression profiles of patients with vitiligo treated with narrow-band UVB therapy by targeted RNA-seq

Evaluation of skin expression profiles of patients with vitiligo treated with narrow-band UVB therapy by targeted RNA-seq

... the expression patterns of the genes involved in melanocyte mechanisms (Table 1) indicates that two of the selected genes showed differential expression patterns between the skin types (p ...differential ... See full document

9

Interaction of Arabidopsis Trihelix-Domain Transcription Factors VFP3 and VFP5 with Agrobacterium Virulence Protein VirF.

Interaction of Arabidopsis Trihelix-Domain Transcription Factors VFP3 and VFP5 with Agrobacterium Virulence Protein VirF.

... support by our data that even relatively modest levels of suppression affected expression of substantial numbers of genes, many of which were indicative of overall ...gene expression changes observed ... See full document

23

R-seqQI: RNA-Seq Quality Indicator

R-seqQI: RNA-Seq Quality Indicator

... in RNA-Seq of non-model ...objective, RNA-Seq data from nine model organisms (Arabidopsis thaliana, Aspergillus nidulans, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, Mus ... See full document

137

Self-contained induction of neurons from human embryonic stem cells.

Self-contained induction of neurons from human embryonic stem cells.

... maintain neural cells stable for only few ...of neural tissues as source of astrocytes, and extensive time and effort to obtain astrocytes from living ... See full document

8

Heterogeneous Effects of Direct Hypoxia Pathway Activation in Kidney Cancer.

Heterogeneous Effects of Direct Hypoxia Pathway Activation in Kidney Cancer.

... identified by peak calling and ranked on the vertical axis according to signal ...affected by the re-expression of full-length HIF-1α (compare i and ...co-occupied by HIF-1β (compare iv and ... See full document

19

UNIVERSIDADE FEDERAL DE UBERLÂNDIA FACULDADE DE MEDICINA PROGRAMA DE PÓS-GRADUAÇÃO EM CIÊNCIAS DA SAÚDE LUIZ CARLOS DE OLIVEIRA JÚNIOR

UNIVERSIDADE FEDERAL DE UBERLÂNDIA FACULDADE DE MEDICINA PROGRAMA DE PÓS-GRADUAÇÃO EM CIÊNCIAS DA SAÚDE LUIZ CARLOS DE OLIVEIRA JÚNIOR

... O Fator neurotrófico derivado do cérebro (BDNF), uma das mais importantes neurotrofinas, tem sido relacionada tanto com o desenvolvimento como com a melhora da depressão (GROVES, 2007). Em modelos animais o estresse de ... See full document

73

Transcriptome analysis of chlorantraniliprole resistance development in the diamondback moth Plutella xylostella.

Transcriptome analysis of chlorantraniliprole resistance development in the diamondback moth Plutella xylostella.

... gene expression levels in metabolic pathways, such as drug metabolism- cytochrome P450, metabolism of xenobiotics by cytochrome P450 and drug metabolism-other enzymes, were up-regulated with the increasing ... See full document

13

Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs.

Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs.

... Methods). RNA-seq reads that map to these chromatin-associated genes were used to conduct Fisher’s exact ...differential expression be- tween mop1 mutants and non-mutants, including those affecting ... See full document

9

Detecting heterogeneity in single-cell RNA-Seq data by non-negative matrix factorization

Detecting heterogeneity in single-cell RNA-Seq data by non-negative matrix factorization

... Population-level RNA-Seq differential expression analysis, such as DESeq2 (Love, Huber & Anders, 2014) and edgeR (Robinson, McCarthy & Smyth, 2010), are designed to compare pre-labeled ... See full document

20

The utility of shallow RNA-Seq for documenting differential gene expression in genes with high and low levels of expression.

The utility of shallow RNA-Seq for documenting differential gene expression in genes with high and low levels of expression.

... high expression levels, making them easier to identify than genes with functions in other ...of expression, while others have average or low ...differential expression between the two tissue types ... See full document

11

Microarray expression analysis of the main inflorescence in Brassica napus.

Microarray expression analysis of the main inflorescence in Brassica napus.

... Before normalization, basic pre-processing was performed. Samples that were originally negative after background subtrac- tion and those with an overall signal intensity of #100 were filtered out. Array features ... See full document

11

Mining RNA-seq data for infections and contaminations.

Mining RNA-seq data for infections and contaminations.

... gene expression. As one of the major challenges in analyzing RNAseq data is the identification of the transcriptomic origin of each sequencing read (mapping), this has inspired the development of ... See full document

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