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[PDF] Top 20 Chapter 10: Mining genome-wide genetic markers.

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Chapter 10: Mining genome-wide genetic markers.

Chapter 10: Mining genome-wide genetic markers.

... human genome contains over 3 billion DNA base ...the genome, a genetic variation may be found which involves two or more nucleotides across different ...These genetic variations are known as ... See full document

9

Development and Integration of Genome-Wide Polymorphic Microsatellite Markers onto a Reference Linkage Map for Constructing a High-Density Genetic Map of Chickpea.

Development and Integration of Genome-Wide Polymorphic Microsatellite Markers onto a Reference Linkage Map for Constructing a High-Density Genetic Map of Chickpea.

... based genetic markers [4]. Microsatellite markers are highly informative and have gained con- siderable importance over other marker systems for genetic analysis in crop plants because of ... See full document

14

Genome-wide search for strabismus susceptibility loci.

Genome-wide search for strabismus susceptibility loci.

... The genome-wide search was performed with amplifi- cation by polymerase chain reaction (PCR) of 400 markers in microsatellite regions with∼10 cM ...310 Genetic Analyzer, and analyzed by ... See full document

8

Genome-wide association mapping of root traits in a japonica rice panel.

Genome-wide association mapping of root traits in a japonica rice panel.

... 9, 10 and 11 (Figure ...same genetic background than the association panel, 4 loci on chromosomes 1, 7 and 9 co-localized with those ...between markers below 20 kb), we also surveyed the genes that ... See full document

18

Genome wide characterization of short tandem repeat markers in sweet orange (Citrus sinensis).

Genome wide characterization of short tandem repeat markers in sweet orange (Citrus sinensis).

... narrow genetic basis of the cultivated citrus species. Inter species genetic diversity in sweet orange is relatively low compared to other citrus species as reveled in early studies using different types of ... See full document

12

Genome-wide association study on the development of cross-reactive neutralizing antibodies in HIV-1 infected individuals.

Genome-wide association study on the development of cross-reactive neutralizing antibodies in HIV-1 infected individuals.

... only 10–30% of patients have cross-reactive neutralizing humoral immunity which may relate to viral and or host ...host genetic markers in the formation of cross-reactive neutralizing activity (CrNA) ... See full document

7

Accounting for Population Structure in Gene-by-Environment Interactions in Genome-Wide Association Studies Using Mixed Models.

Accounting for Population Structure in Gene-by-Environment Interactions in Genome-Wide Association Studies Using Mixed Models.

... In addition to the simulation, we utilize two GxE GWAS datasets to show that population structure may cause serious effects on GEIs. One dataset is an expression quantitative trait loci (eQTL) study of the human aortic ... See full document

19

rs1004819 is the main disease-associated IL23R variant in German Crohn's disease patients: combined analysis of IL23R, CARD15, and OCTN1/2 variants.

rs1004819 is the main disease-associated IL23R variant in German Crohn's disease patients: combined analysis of IL23R, CARD15, and OCTN1/2 variants.

... of genome-wide association studies in the genetics of complex diseases, the contribution of certain IL23R variants to CD or UC is not sufficiently strong to explain the genetic background of IBD on ... See full document

8

MEDIDAS DE DESEMPENHO FINANCEIRAS E SEUS EFEITOS   Merchant   Chapter 10

MEDIDAS DE DESEMPENHO FINANCEIRAS E SEUS EFEITOS Merchant Chapter 10

... Além disso, para as empresas de capital aberto, as medidas de mercado estão disponíveis em tempo hábil (ou seja, estão disponíveis diariamente, ou até mesmo com maior frequência); são [r] ... See full document

32

Genetic determinants of cardiovascular events among women with migraine: a genome-wide association study.

Genetic determinants of cardiovascular events among women with migraine: a genome-wide association study.

... the genome-wide analyses, we assumed an additive relationship between the number of copies of the minor allele of each SNP and the age-adjusted log-odds of CVD ...for genome-wide significance ... See full document

8

Genome-Wide Selection for tropical maize root traits under conditions of nitrogen and phosphorus stress=Seleção Genômica Ampla para caracteres de raiz em milho tropical em condições de estresse de nitrogênio e fósforo

Genome-Wide Selection for tropical maize root traits under conditions of nitrogen and phosphorus stress=Seleção Genômica Ampla para caracteres de raiz em milho tropical em condições de estresse de nitrogênio e fósforo

... of genetic variation with significant differences for all ...of genetic variability, which allows for the selection of and genetic gains in maize root traits and, consequently, a better response to ... See full document

7

Genotyping-By-Sequencing (GBS) Detects Genetic Structure and Confirms Behavioral QTL in Tame and Aggressive Foxes (Vulpes vulpes).

Genotyping-By-Sequencing (GBS) Detects Genetic Structure and Confirms Behavioral QTL in Tame and Aggressive Foxes (Vulpes vulpes).

... their genetic structure has not been previously ...the genetic composition of these fox ...revealed genetic divergence between the two strains and more diversity in the aggressive strain than in the ... See full document

22

Development of a panel of genome-wide ancestry informative markers to study admixture throughout the Americas.

Development of a panel of genome-wide ancestry informative markers to study admixture throughout the Americas.

... Funding: This work was made possible by the Latin American Cancer Epidemiology (LACE) Consortium, which has been supported with travel/meeting grants from the National Cancer Institute and by Contract #HHSN261201000641P ... See full document

16

Parent-of-origin effects in autism identified through genome-wide linkage analysis of 16,000 SNPs.

Parent-of-origin effects in autism identified through genome-wide linkage analysis of 16,000 SNPs.

... Empirical genome-wide p values were calculated via ...and genome-wide empirical p values were estimated by extrapolating results for chromosome 1 to the whole-genome level, assuming ... See full document

8

Genetic architecture of skin and eye color in an African-European admixed population.

Genetic architecture of skin and eye color in an African-European admixed population.

... underlying genetic architecture in Cape Verde is very ...the genome’’ (beyond APBA2 (OCA2), GRM5-TYR, and SLC24A5) has a very strong influence on skin color, nearly twice that of all four single loci ... See full document

15

Genome-Wide Association Study of Genetic Variants in LPS-Stimulated IL-6, IL-8, IL-10, IL-1ra and TNF-α Cytokine Response in a Danish Cohort.

Genome-Wide Association Study of Genetic Variants in LPS-Stimulated IL-6, IL-8, IL-10, IL-1ra and TNF-α Cytokine Response in a Danish Cohort.

... Methods: We performed an initial genome-wide association study using Affymetrix Human Mapping 500 K GeneChipH to screen 130 healthy individuals of Danish descent. The levels of IL-6, IL-8, IL-10, ... See full document

6

Nucleosome Repositioning: A Novel Mechanism for Nicotine- and Cocaine-Induced Epigenetic Changes.

Nucleosome Repositioning: A Novel Mechanism for Nicotine- and Cocaine-Induced Epigenetic Changes.

... F12:EMEM, 10% FBS, 50ug/mL ...additional 10, 60, and 90 min following addition of nicotine; or 5, 20, 40 and 60 min following addition of cocaine, (based on previous reports showing changes in gene and ... See full document

19

A genome wide meta-analysis study for identification of common variation associated with breast cancer prognosis.

A genome wide meta-analysis study for identification of common variation associated with breast cancer prognosis.

... In this study we report a genome wide meta-analysis for identifying genetic variants associated with breast cancer related mortality. In combined meta-analysis involving 2864 individuals the ... See full document

10

Identification of Genetic Loci Associated with Quality Traits in Almond via Association Mapping.

Identification of Genetic Loci Associated with Quality Traits in Almond via Association Mapping.

... Association mapping (AM), also known as linkage disequilibrium (LD) mapping may com- plement classical linkage mapping for elucidating the genetic basis of complex traits [16]. This approach relies on the strength ... See full document

21

All SNPs are not created equal: genome-wide association studies reveal a consistent pattern of enrichment among functionally annotated SNPs.

All SNPs are not created equal: genome-wide association studies reveal a consistent pattern of enrichment among functionally annotated SNPs.

... considered. Genome-wide association study (GWAS) results were obtained as summary statistics (p-values or z-scores) from public access websites (BMI, Height, WHR, TC, TG, HDL, LDL), published supple- ... See full document

13

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