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[PDF] Top 20 Copy number variation of individual cattle genomes using next-generation sequencing

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Copy number variation of individual cattle genomes using next-generation sequencing

Copy number variation of individual cattle genomes using next-generation sequencing

... dividual copy number variants, including aCGH, quantitative PCR (qPCR), and fluorescent in situ hybridization ...experiments using BTAN1, BTAN2, BTHO, and BINE as test samples and Dominette as the ... See full document

14

Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach.

Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach.

... pairs of HBV-related HCC and tumor-adjacent tissues (Table S4), averaging at about 7 HBV integrations per ...genome sequencing at more than 30 fold coverage for 81 HBV positive HCCs and identified 399 HBV ... See full document

23

Genome-wide characterization of insertion and deletion variation in chicken using next generation sequencing.

Genome-wide characterization of insertion and deletion variation in chicken using next generation sequencing.

... the number of INDELs identified in our study is the highest so far in ...this number is smaller than the results from Mills et ...this number will be of great ...8.92% of all ... See full document

11

Development of a low bias method for characterizing viral populations using next generation sequencing technology.

Development of a low bias method for characterizing viral populations using next generation sequencing technology.

... extent of coverage of both a simple and a more complex sample, we sequenced a control viral sample, the canonical NL4-3 strain, as well as a clinical sample consisting of a heterogeneous HIV ... See full document

9

A trial of karyotypic microdissection as an enrichment pathway for next-generation sequencing

A trial of karyotypic microdissection as an enrichment pathway for next-generation sequencing

... essence of the problem lies in the lack of enough depth of coverage from reads from a particular polymorphic genomic region, which fail to thoroughly represent one or more of the polymorphisms ... See full document

104

Application of Next-generation Sequencing in Clinical Molecular Diagnostics

Application of Next-generation Sequencing in Clinical Molecular Diagnostics

... coverage of all the phenotype-specific genes by filling in the gaps with complementary methods including Sanger sequencing or long range ...coverage of these genes compared to WES, which provides ... See full document

15

Read length and repeat resolution: exploring prokaryote genomes using next-generation sequencing technologies.

Read length and repeat resolution: exploring prokaryote genomes using next-generation sequencing technologies.

... 6. Variation in assembly results within taxa. The median number of repeat-induced gaps for all members of a group is represented by ...bounds of the hollow rectangle correspond to the ... See full document

9

Assessing Mitochondrial DNA Variation and Copy Number in Lymphocytes of ~2,000 Sardinians Using Tailored Sequencing Analysis Tools.

Assessing Mitochondrial DNA Variation and Copy Number in Lymphocytes of ~2,000 Sardinians Using Tailored Sequencing Analysis Tools.

... DNA sequencing identifies common and rare genetic variants for association studies, but studies typically focus on variants in nuclear DNA and ignore the mitochondrial ...analysis of mtDNA in next- ... See full document

18

Transcriptome analysis of the Asian honey bee Apis cerana cerana.

Transcriptome analysis of the Asian honey bee Apis cerana cerana.

... transcriptome sequencing to obtain more sequence information of all the transcribed genes in ...endpoint of postembryonic development and the starting point for caste-specific task perfor- mance [3], ... See full document

11

Transcriptome response to elevated atmospheric CO2 concentration in the Formosan subterranean termite, Coptotermes formosanus Shiraki (Isoptera: Rhinotermitidae)

Transcriptome response to elevated atmospheric CO2 concentration in the Formosan subterranean termite, Coptotermes formosanus Shiraki (Isoptera: Rhinotermitidae)

... The number of OR genes was obviously smaller than that of other insects, such as ...Or83b of Holotrichia oblita, Plutella xylostella, Helicoverpa assulta, ...The number of GR ... See full document

23

Identification and characterization of microRNAs in normal equine tissues by Next Generation Sequencing.

Identification and characterization of microRNAs in normal equine tissues by Next Generation Sequencing.

... characterization of miRNAs in major organs including liver, skeletal muscle, and large intestine has significant clinical relevance to important equine ...34% of horses undergoing an exploratory laparotomy ... See full document

10

PeSV-Fisher: identification of somatic and non-somatic structural variants using next generation sequencing data.

PeSV-Fisher: identification of somatic and non-somatic structural variants using next generation sequencing data.

... independently of which algorithm was used for calling, and we checked the overlap with our ...variability of the insert sizes in the combined libraries ...overlap of our calls with these validated ... See full document

10

Next Generation Semiconductor Based Sequencing of the Donkey (Equus asinus) Genome Provided Comparative Sequence Data against the Horse Genome and a Few Millions of Single Nucleotide Polymorphisms.

Next Generation Semiconductor Based Sequencing of the Donkey (Equus asinus) Genome Provided Comparative Sequence Data against the Horse Genome and a Few Millions of Single Nucleotide Polymorphisms.

... relevance of this equid and the new raising interests around it, few studies inves- tigated this species at the molecular genetic level (with DNA markers) or at the whole genome level (analyzing karyotypes and ... See full document

18

Probing the SELEX process with next-generation sequencing.

Probing the SELEX process with next-generation sequencing.

... stretch of 40 randomized bases flanked by 18 constant bases as primer binding sites for PCR ...devoid of hairpin, dimer, and heterodimer-forming ...terms of next generation ... See full document

10

Correction: A Next-Generation Sequencing Method for Genotyping-by-Sequencing of Highly Heterozygous Autotetraploid Potato.

Correction: A Next-Generation Sequencing Method for Genotyping-by-Sequencing of Highly Heterozygous Autotetraploid Potato.

... Uitdewilligen JGAML, Wolters A-MA, D’hoop BB, Borm TJA, Visser RGF, van Eck HJ (2013) A Next- Generation Sequencing Method for Genotyping-by-Sequencing of Highly Heterozygous Autotetrapl[r] ... See full document

1

Next-generation phylogeography: a targeted approach for multilocus sequencing of non-model organisms.

Next-generation phylogeography: a targeted approach for multilocus sequencing of non-model organisms.

... array of next-generation sequencing technology has a number of different applications to population and conservation genetics ...few of these technologies have been ... See full document

10

Epigenetic regulation of microRNA genes and the role of miR-34b in cell invasion and motility in human melanoma.

Epigenetic regulation of microRNA genes and the role of miR-34b in cell invasion and motility in human melanoma.

... form of skin cancer. The treatment of melanoma-derived cell lines with 5-aza-29- deoxycytidine (5-Aza-dC) markedly increases the expression of several miRNAs, suggesting that the miRNA-encoding genes ... See full document

12

Development of a comprehensive noninvasive prenatal test

Development of a comprehensive noninvasive prenatal test

... detection of point ...plasma sequencing data regardless of fetal ...targeted sequencing data to predict FF through a statistical binomial mixture model, relying on several mother-child ... See full document

10

Robust regression analysis of copy number variation data based on a univariate score.

Robust regression analysis of copy number variation data based on a univariate score.

... Details of the implementation of these six methods in these data can be found in Ely ...smallest number of calls (195) but the highest proportion of true deletions that were at least ... See full document

8

CNVs em Pacientes com Lúpus Eritematoso Sistêmico

CNVs em Pacientes com Lúpus Eritematoso Sistêmico

... denominadas Copy Number Variations (CNVs) e definidas como segmentos genômicos, geralmente maiores do que 1 kilobase (kb), que variam em número de cópias em comparação com o genoma de referência (ALKAN; ... See full document

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