[PDF] Top 20 Density based pruning for identification of differentially expressed genes from microarray data
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Density based pruning for identification of differentially expressed genes from microarray data
... Director of ASCI); ...(Director of the Institute for Informatics, University of Amsterdam, The Netherlands and Editor-in-Chief, Future Generation Computer Systems, Elsevier); ...Institute of ... See full document
14
Spotlight on differentially expressed genes in urinary bladder cancer.
... Oligos microarray chips ( ,57K genes) were obtained from GE HealthCare (IL) and AppliedMicroarrays (MA) (CodeLink 57K Human Whole ...a microarray scanner (ScanArray ...ScanArray ... See full document
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Resistance of renal cell carcinoma to sorafenib is mediated by potentially reversible gene expression.
... analysis of sorafenib treated tumors. A) Unsupervised Pearson Correlation based cluster of untreated tumors harvested at 12 mm (A), at treatment day 3 (C), treatment resistant (tumors that had grown ... See full document
10
Identification of Gene Modules Associated with Low Temperatures Response in Bambara Groundnut by Network-Based Analysis.
... files from the previous step and then normal- ized using the RMA algorithm present in “affy” package of BioConductor in an R environment ...normalized data, only the probe-sets present (P) in all the ... See full document
18
High-resolution transcriptome of human macrophages.
... derstanding of biological principles of macrophage polarization we applied network analysis based on a priori information assessing the information content of RNA-seq data in compar- ... See full document
16
Network Analysis for the Identification of Differentially Expressed Hub Genes Using Myogenin Knock-down Muscle Satellite Cells.
... distinguished from their quiescent progenitors based on distinctive gene expression ...steps of embryonic myogenesis to either add to or replace current muscle fibers ...status of genes ... See full document
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Network-based analysis of differentially expressed genes in cerebrospinal fluid (CSF) and blood reveals new candidate genes for multiple sclerosis
... obtained from the ArrayExpress Database under the accession number of EMTAB- 69 based on the Human Genome 133 plus ...consisted of 26 multiple sclerosis patients, of whom 12 and 14 ... See full document
22
Construction and analysis of the protein-protein interaction networks based on gene expression profiles of Parkinson's disease.
... Results: Microarray based gene expression data and protein-protein interaction (PPI) databases were combined to construct the PPI networks of differentially expressed (DE) ... See full document
17
Transcription factors and microRNA-co-regulated genes in gastric cancer invasion in ex vivo.
... relevant differentially expressed genes using the transcription factors and miRNA-co-regulated network analysis for gastric ...constructed based on data ob- tained from cDNA ... See full document
13
Genes and (common) pathways underlying drug addiction.
... item of evidence linking genes to addiction, in particular the nature of the addictive substance, we could ask next what are the pathways underlying addiction to each type of substance, and ... See full document
7
Suppression subtractive hybridization reveals transcript profiling of Chlorella under heterotrophy to photoautotrophy transition.
... ability of Chlorella to restart photosynthetic function to protect heterotrophically grown cells from photodamage under sudden light ...upregulation of these proteins in response to light stress has ... See full document
15
Exploring matrix factorization techniques for significant genes identification of Alzheimer’s disease microarray gene expression data
... [r] ... See full document
1
Epigenetic biomarkers as predictors of clinical outcomes in colorectal cancer
... respetivos genes encontrados diferencialmente expressos no mesmo estadio (p-value < ...em genes envolvidos no desenvolvimento e regulação do sistema nervoso como desreguladas em diversos tipos de ...dos ... See full document
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Gene Expression Differences in Peripheral Blood of Parkinson ’s Disease Patients with Distinct Progression Profiles
... diagnosis of PD according to the UK Brain Bank criteria for idiopathic PD [13] and the pres- ence of motor symptoms for 10 years or ...presence of postural instability, ...quality of life [5]. ... See full document
19
Long noncoding RNA-EBIC promotes tumor cell invasion by binding to EZH2 and repressing E-cadherin in cervical cancer.
... for microarray analysis. Raw data (CEL files) were normalized at the transcript level using the robust multi- average method (RMA ...summarization of transcript expression was calculated. Gene-level ... See full document
9
An extension of PPLS-DA for classification and comparison to ordinary PLS-DA.
... development of PPLS-DA followed the development of powered partial least squares as a natural extension of the power methodology to handle discrete ...application of powers enables focusing on ... See full document
13
Identification of differentially expressed proteins from Leishmania amazonensis associated with the loss of virulence of the parasites.
... diversity of clinical manifestations in mammal hosts, including tegumentary and visceral ...variation of infectivity of L. amazonensis, which was pre- isolated from lesions of ... See full document
13
Identifying stably expressed genes from multiple RNA-Seq data sets
... set of stably-expressed genes will be useful for count ...task of RNA-Seq analysis is to detect DE genes under various experimental or environmental ...numbers of mapped reads ... See full document
26
Evaluation of gene selection metrics for tumor cell classification
... spite of the method employed to acquire the gene expression data, their analysis involves several aspects that have been addressed in the literature (Brazma and Vilo, 2000; Dopazo et ...One of these ... See full document
7
Gene expression pro filing analysis of lung adenocarcinoma
... potential genes related to lung adenocarcinoma, with the aim of further understanding disease ...samples from 10 patients with lung adenocarcinoma aged 45-73 years was downloaded from Gene ... See full document
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