[PDF] Top 20 Design of transcriptional regulatory elements for Streptomyces
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Design of transcriptional regulatory elements for Streptomyces
... ability of Streptomyces bacteria of producing secondary metabolites fits them into the optimal choice for development of chassis for the heterologous expression of natural or engineered ... See full document
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Classification and structure-based inference of transcriptional regulatory proteins
... majority of the sigma factors and the σ 54 ...-35 elements to form the closed complex, whereas the σ 54 has more affinity for recognition sequences in the -24 and -12 positions upstream of the ... See full document
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Uncovering transcriptional cisregulatory elements active in zebrafish adult exocrine pancreas
... characteristics of zebrafish, including a relatively inexpensive maintenance, husbandry and high fecundity rate make it a preferred model for research (Ishibashi et ...hundreds of eggs that are externally ... See full document
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Iterative reconstruction of transcriptional regulatory networks: an algorithmic approach.
... As of January 2006, the TIGR Comprehensive Microbial Resource [1] contained 259 bacterial and 23 archaeal sequenced genomes, and the GOLD database [2] listed 987 ongoing prokaryotic sequencing ...number of ... See full document
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Genome-wide identification of regulatory elements and reconstruction of gene regulatory networks of the green alga Chlamydomonas reinhardtii under carbon deprivation.
... The design of primer pairs was based on the ...models of the genome annotation ...scaffold_289:8821-10643) of the ...primer design were as follows [45]: Tm = 60 ± 1°C, length 18 to 25 ... See full document
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Iron deprivation in synechocystis: inference of pathways, non-coding RNAs, and regulatory elements from comprehensive expression profiling
... quality of the extracted RNA was assessed using a NanoDrop ND-1000 spectropho- tometer (NanoDrop Technologies) and gel ...sample of 10 mg of RNA was treated with Turbo-DNase (Ambion) following the ... See full document
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Deciphering the cis-regulatory elements for XYR1 and CRE1 regulators in Trichoderma reesei.
... presence of these elements in the promoters of the cellulase-encoding ...the transcriptional level by induction in the presence of the substrates (such as cellulose and sophorose) and ... See full document
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The majority of primate-specific regulatory sequences are derived from transposable elements.
... half of human DNA is derived from sequences known as TEs that have successfully replicated in the genome during the evolution of our species ...behavior of TEs was initially put forward as a ... See full document
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Composite effects of polymorphisms near multiple regulatory elements create a major-effect QTL.
... concentration of significantly associated polymorphisms spans the promoter and transcription start site of bab2 (red bar in the blowup of region 3, Figure ...thought of as passive players in ... See full document
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Computational discovery of transcriptional regulatory modules in fungal ribosome biogenesis genes reveals novel sequence and function patterns.
... aspects of the RBA regulatory ...dozens of other fungi distributed across fungal phylogeny. We also design and apply a comprehensive computa- tional approach aimed at identifying the ... See full document
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Glycans as regulatory elements of the insulin/IGF system: Impact in cancer progression
... inhibition of the PI3K/AKT1/mTORC1 pathway or knockdown of IGF1R suppresses the EMT program, reducing stem cell niches [ 40 ...increase of INSR-A and IGF2 when compared to normal ...degree of ... See full document
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Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli.
... composition of the subgraphs induced by the subnets of each cluster (see Figure 3 in Text S1) by computing the z-score (see Materials and Methods for a detailed description of the z-score ... See full document
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Regulatory elements involved in the post-transcriptional control of stage-specific gene expression in Trypanosoma cruzi - A Review
... part of the differen- tiation process and may be a protection mechanism for parasite survival (McNicoll et ...Analyses of the whole genomes of ...presence of various HSP families (Folgueira ... See full document
10
Global analysis of photosynthesis transcriptional regulatory networks.
... cases of redundancy in a TRN or overlapping target genes of TFs, it is important to identify promoter elements that may allow discrimination between binding ...gene regulatory network. An ... See full document
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Identification of Predictive Cis-Regulatory Elements Using a Discriminative Objective Function and a Dynamic Search Space.
... set of sequences for shared cis-regulatory ele- ...set of sequences the search ...algorithms of this class include AlignACE [4] and MEME [14], which use Gibbs sampling and expectation ... See full document
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Design elements that influence the participation of solvers in innovation contests
... lack of cross referencing of studies on this subject, or due to fact that these organizations can engage in all sorts of activities (Howells, ...concept of innovation ...examples of ... See full document
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Transcriptional regulators and regulatory pathways involved in prostate gland adaptation to a hypoandrogen environment
... sixty transcriptional regulators (including 10 TF) and to in- tegrate their function in physiologically relevant ...percent of three cancer cohorts and six of them (PHOX2A, NFYC, EST2, EIF2S1, SSRP1 ... See full document
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Analysis of molecular diversity and cis-regulatory elements in the promoters of lignin genes in Eucalyptus species
... analysis of the CREs content conservation of regions with low nucleotide diversity (Table S6) showed that more than half (52%) ...5) of occurrences were totally conserved in all Eucalyptus ...losses ... See full document
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Brain region-specific expression of MeCP2 isoforms correlates with DNA methylation within Mecp2 regulatory elements.
... Expression of both Mecp2/MeCP2 isoforms at the transcript and protein levels was studied by qRT-PCR and Western blot (WB) experiments, ...detection of MeCP2E1 specifically in the nuclear fractions of ... See full document
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Atividade antioxidante e antimicrobiana de Streptomyces hygroscopicus / Antioxidant and antimicrobial activity of Streptomyces hygroscopicus
... Streptomyces spp. (HWANG et al., 2014; TAN, et al., 2015). Esses microrganismos estão presentes em uma ampla variedade de ambientes naturais como solo, atmosfera, rios, lagos, ambientes marinhos e em habitats com ... See full document
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