[PDF] Top 20 Differential Gene Expression (DGE) by RNA sequencing analysis and development of software for integrating different DGE methods
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Differential Gene Expression (DGE) by RNA sequencing analysis and development of software for integrating different DGE methods
... potential of the ...(WT) and two for the mutant NIK T474D lines (Santos et ...Our software parses the content of the SAM files and generates the counting table in comma separated values ... See full document
84
Mechanism analysis of acid tolerance response of bifidobacterium longum subsp. longum BBMN 68 by gene expression profile using RNA-sequencing.
... details of the methods for alignment of read and quantization of gene expression were represented in Peng Cui’s study ...Corona_lite_v4.2 software available at ... See full document
18
Long Noncoding RNA Expression during Human B-Cell Development.
... noncoding RNA expression during human B-cell development The use of RNA-sequencing technologies has led to the identification of tens of thousands of lncRNAs ... See full document
19
Transcriptome-wide analysis reveals candidate genes responsible for the asymmetric pigment pattern in scallop Patinopecten yessoensis
... bivalve and naturally distributes along the coastline of the northern islands of Japan, northern Korean Peninsula, and Russian Primorye, Sakhalin and Kurile islands (Ito, ...large ... See full document
11
Expression of genes SBP and leginsulin in contrasting soybean seed coats
... phase of seed formation, young seed coats remain attached to the embryo providing this necessary substances to its full development, from the previous storage in the integument and subsequent ... See full document
6
WNT5A inhibits metastasis and alters splicing of Cd44 in breast cancer cells.
... identified gene expression signatures that define breast cancer metastasis ...Microarray and RNA-seq performed in this report provide a comprehensive view of changes in gene ... See full document
12
Identification of probable early-onset biomarkers for tuberculosis disease progression.
... time-point and were comparable to the non-progressors at 18 ...frequency of Va24+Vb11+ NKT cells (median[IQR] = ...level of CD4+CD25+ cells (median[IQR] = ...0.09[0.05–0.33] and 1.1[0.7–1.4] ... See full document
9
Analysis of gene expression in adipocytes of individuals with metabolic syndrome by multivariate statistical methods
... Neste trabalho come¸c´ amos por usar o m´ etodo de an´ alise fatorial con- firmat´ oria para quantificar a gravidade da s´ındrome metab´ olica numa pop- ula¸c˜ ao de homens finlandeses. Este modelo, que se apresentou ... See full document
79
The SKP1-like gene family of Arabidopsis exhibits a high degree of differential gene expression and gene product interaction during development.
... nodes of ASK gene expression and ASK protein interaction at a higher resolution across different spatial and temporal dimensions at the organ, cellular and sub-cellular ... See full document
13
Analysis of the workers head transcriptome of the Asian subterranean termite, Coptotermes gestroi
... most of the termites are xylophagous, they have the ability to digest lignocellulose due to lignocellulose enzymes present in their digestive tract and in their gut symbionts (Nakashima et ...cations ... See full document
9
SuperSAGE digital expression analysis of differential growth rate in a European sea bass population
... STRING analysis revealed a high representation of transcripts for ri- bosomal proteins and transcription factors in all tissues, which was perhaps unsurprisingly taking into consideration the ... See full document
10
Integrative meta-analysis of differential gene expression in acute myeloid leukemia.
... studies. Of the total 4,918 genes, 1,686 ...studies by number of references, number of expression platforms, and number of expression features (Table ...most ... See full document
13
Genome-wide analysis reveals the unique stem cell identity of human amniocytes.
... genome-wide analysis reveals that second trimester amniocytes already express many of these same germ layer specific markers at robust levels, and do not require any additional manipulation in order ... See full document
16
Up-regulated expression of extracellular matrix remodeling genes in phagocytically challenged trabecular meshwork cells.
... coded by MMP1 and MMP3 belong to the matrix metalloproteinases (MMPs) family, a group of zinc-containing endopeptidases that actively participate in the degradation of components of the ... See full document
13
Identification and differential expression of microRNAs in ovaries of laying and Broody geese (Anser cygnoides) by Solexa sequencing.
... verification. Of the four validated miRNAs, miR-320 has been extensively studied in the ...The expression of miR-320 is increased in the ovary of rats with polycystic ovary syndrome [42], ... See full document
9
A network-based gene expression signature informs prognosis and treatment for colorectal cancer patients.
... oncogenes and tumor suppressors in a protein-protein interaction ...genes of potential mechanistic importance to the CRC re- currence ...to gene expression alteration, somatic mutations in ... See full document
13
Identification of Drosophila mitotic genes by combining co-expression analysis and RNA interference.
... frequency of spontaneous chromo- some aberrations. Of the 44 genes identified by these dsRNAs, 38 have apparent human orthologs (Figure 4C) yet only 4 have previously been implicated in the ... See full document
18
Initial genomics of the human nucleolus.
... assembly of rDNA containing 454 sequence reads is shown in the upper part and the scheme of the rDNA repeat unit below (black arrows indicate the position and direction of individual ... See full document
11
Studying Dynamic Features in Myocardial Infarction Progression by Integrating miRNA-Transcription Factor Co-Regulatory Networks and Time-Series RNA Expression Data from Peripheral Blood Mononuclear Cells.
... Nowadays, different genomics data can be measured over time, of which time-series gene expression data are one of the most abundant and available data ...time-series gene ... See full document
16
Akt2 siRNA-nanoparticulate system as a new tool to restoration of e-cadherin and eradicate tumor metastic phenotype
... acquisition of stemeness phenotype by other cells within tumors seems to be a bidirectional dynamic process (Figure ...model of cancer cannot explain the dynamic behavior of CSC, a new ... See full document
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