[PDF] Top 20 Genome-wide DNA methylation patterns and transcription analysis in sheep muscle.
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Genome-wide DNA methylation patterns and transcription analysis in sheep muscle.
... DNA methylation plays a central role in regulating many aspects of growth and development in mammals through regulating gene ...for genome-wide, high resolution ... See full document
7
Genome-wide DNA methylation analysis predicts an epigenetic switch for GATA factor expression in endometriosis.
... differential methylation we uncovered in endometriosis suggests that several different mechanisms are at ...hypo- and hypermethylation in endometriotic cells, and these were distributed ... See full document
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Whole-genome analysis of DNA methylation across cancer types reveals specific patterns in early stages
... The genome can be considered a large file which is regulated in a meticulous way to minimize the damage caused by ...present in identical amounts in all cells, ...cell and two copies ... See full document
130
Differential DNA methylation regions in cytokine and transcription factor genomic loci associate with childhood physical aggression.
... animal and human aggression [78–80] and IL-6 was causally linked to aggression in mice by gene knockout evidence ...levels in plasma and chronic physical aggression: young adult men ... See full document
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Identification of methylated genes associated with aggressive clinicopathological features in mantle cell lymphoma.
... expressed in testis and/or placenta, but infrequently expressed in non-germline normal tissues [20], and their expression is reactivated by 5-aza-dC ...located in autoso- mal ... See full document
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Influence of DNMT genotype on global and site specific DNA methylation patterns in neonates and pregnant women.
... IGFBP3 and ZNT5 promoter regions was quantified (Table 1). CpG site 4 in ZNT5 was very highly methylated with little inter-individual variation (median methylation = 100%) and was excluded ... See full document
8
Genome-wide linkage analysis of global gene expression in loin muscle tissue identifies candidate genes in pigs.
... p-values and fold-changes (relative expression of Duroc to Pietrain allele of origin) for significant eQTL were input into the Ingenuity Pathways Analysis software (Ingenuity Systems, Red- wood City, CA, ... See full document
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A genome-wide analysis of FRT-like sequences in the human genome.
... location in LINE1 (Figure 6A), on average, FRT-like sequences are more rare in repeated genomic DNA than in unique DNA: repetitive DNA constitutes about 50% of the human ... See full document
11
A novel statistic for genome-wide interaction analysis.
... tions in humans are limited and the essential issue of how to define and detect gene-gene interactions remains ...define and measure interaction in epidemiologic studies [7,8,11– 15]; ... See full document
15
Overlapping DNA methylation dynamics in mouse intestinal cell differentiation and early stages of malignant progression.
... changes in DNA methylation when compared with intestinal stem cells ...amplicons), and a large subset of them were shared with differentiated cells (in the case of hypermethylations), ... See full document
22
The prima donna of epigenetics: the regulation of gene expression by DNA methylation
... result in silencing through DNA ...the transcription rate of the gene ...mutations in the HDAC genes may result in cancer ...activity and could be read by the methyla- tion ... See full document
11
Genome-Wide Analysis of the AP2/ERF Transcription Factors Family and the Expression Patterns of DREB Genes in Moso Bamboo (Phyllostachys edulis).
... AP2/ERF transcription factor family, one of the largest families unique to plants, per- forms a significant role in terms of regulation of growth and development, and responses to biotic ... See full document
22
Genome-wide transcription analyses in Mycobacterium tuberculosis treated with lupulone
... roles in metabolism of fatty acids, steroids, and other lipophilic molecules (De- nisov et ...tuberculosis genome sequence revealed an unexpectedly high number of CYP450s (Cole et ...of ... See full document
9
Genome-wide mapping of DNA strand breaks.
... assess DNA damage include electrophoretic techniques such as pulse-field gel electrophoresis (PFGE)[1] or single-cell electrophoresis (Comet assay)[2] for a global assessment of DNA ...displaying DNA ... See full document
10
Genome-wide analysis of long noncoding RNA (lncRNA) expression in hepatoblastoma tissues.
... Statistical analysis was performed using Student’s t-test to compare two variables of microarray ...change, and a difference with ...lncRNAs and mRNAs was a fold change ...hepatoblastoma and ... See full document
9
Genome-wide patterns of genetic variation within and among alternative selective regimes.
... on genome-wide variation in a simplified setting, demonstrating distinct differences between environmental heterogeneity in space versus time and between sites likely to be closely ... See full document
15
Differential methylation of the HPV 16 upstream regulatory region during epithelial differentiation and neoplastic transformation.
... published in the GenBank under the accession number NC_001526) was PCR-amplified with Pfu polymerase (Stratagene) and specific primers containing restriction enzyme recognition sequences for HindIII (5 ... See full document
13
Intronic L1 retrotransposons and nested genes cause transcriptional interference by inducing intron retention, exonization and cryptic polyadenylation.
... Quantitative analysis of different NCAM transcripts revealed that deletion of L1 5 9 UTR (or SP) increased exon 9 skipping about 5-fold (Figure 6C, ...5 and 6), consistent with the RT-PCR experiments ... See full document
20
DNA methylation modulates H19 and
... (Fermentas) and reverse transcribed to cDNA using the BioRT cDNA first strand synthesis kit (Bioer Technology, Hangzhou, ...H19 and IGF2. The primer sequences are listed in Table ...expression ... See full document
7
Genome-wide analysis of the Dof transcription factor gene family reveals soybean-specific duplicable and functional characteristics.
... Genome-wide analysis revealed the existence of 78 full-length Dof genes, and multiple sequence alignment of the GmDof proteins showed strong conservation of four cysteine residues and ... See full document
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