[PDF] Top 20 Identification of Salmonella for public health surveillance using whole genome sequencing
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Identification of Salmonella for public health surveillance using whole genome sequencing
... trimmed using Trimomatic (Bolger, Lohse & Usadel, 2015) with bases removed from the trailing end that fell below a PHRED score of ...(and Salmonella subspecies) and to detect cultures submitted ... See full document
18
Identification of Novel Variants in LTBP2 and PXDN Using Whole-Exome Sequencing in Developmental and Congenital Glaucoma.
... several public databases for the minor allele frequency (MAF) < ...Exome Sequencing Project (ESP6500, ...impact of the sequence variants on the encoded protein, the pathogenicity of ... See full document
9
Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica.
... cause of minor and large food borne ...and identification of outbreaks, reliable sub-typing is ...essential. Whole genome sequencing (WGS) shows great promises for using ... See full document
11
Characterization of the molecular pathogenesis of a malformation syndrome associated with a complex double chromosome translocation
... concept of induced pluripotent stem cells ...levels of telomerase activity and had the ability to form subcutaneous teratomas when injected into immunodeficient ... See full document
73
Advances in Cryptococcus genomics: insights into the evolution of pathogenesis
... analysis of sequence data is based on comparisons to a small number of refer- ence assemblies, which have benefitted from collabora- tive work to generate and curate their ...single genome does not ... See full document
7
Using public health surveillance data to monitor the effectiveness of brucellosis control measures in animals.
... modification of host resistance by vaccinating the entire small ruminant’s population using live attenuated Rev-1 strain of ...and surveillance system (MOSS) to monitor the efficacy of ... See full document
4
Spatial and temporal heterogeneity in high-grade serous ovarian cancer: a phylogenetic analysis.
... degree of CE could have effects on PFS and OS consis- tent with the hypothesis that cancers with high CE may have increased genetic diversity favour- ing the emergence of drug-resistant ...development ... See full document
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Spatiotemporal Co-existence of Two Mycobacterium ulcerans Clonal Complexes in the Offin River Valley of Ghana.
... descendant of the fish and occasionally human pathogen Mycobacterium marinum [2], from which the new species has evolved through the acquisition of a plasmid encoding the enzymatic machinery for the ... See full document
9
Tibet Orbivirus, a novel Orbivirus species isolated from Anopheles maculatus mosquitoes in Tibet, China.
... species of Orbivirus isolated from Culex tritaeniorhynchus specimens collected in Yunnan, China ...The genome of this virus consists of 10 dsRNA segments, and exhibits a 3-4-2-1 migration ... See full document
10
Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects
... variation of still two orders of mag- nitude as shown in this study show clear limitations as ...potential of 16S remains largely unexplored for assessment of relevant invertebrate indicator ... See full document
12
Genomic view of bipolar disorder revealed by whole genome sequencing in a genetic isolate.
... episodes of mania and ...underpinnings of bipolar disorder, causative genetic risk factors remain ...analysis of bipolar disorder in a large Old Order Amish ...genotypes of 388 family members ... See full document
15
The "most wanted" taxa from the human microbiome for whole genome sequencing.
... alignment) of the best matching sequence from several reference databases (Table S1) to each HMP ...1.04 of the Silva database [31] ...collection of full-length sequences as well as against numerous ... See full document
11
De novo assembly of the Indo-Pacific humpback dolphin leucocyte transcriptome to identify putative genes involved in the aquatic adaptation and immune response.
... number of genes showing significant enrichment in these functional categories were identified (Table ...few of genes related with fat storage were ...few of genes related to the response to osmotic ... See full document
9
Identification of neural outgrowth genes using genome-wide RNAi.
... levels of expression in the nuclei of these cells (Figure ...role of Ran in mouse development, we transfected Ran RNAi constructs into the lateral ventricles of the embryonic day 14 (E14) ... See full document
17
Genetic characterisation of Malawian pneumococci prior to the roll-out of the PCV13 vaccine using a high-throughput whole genome sequencing approach.
... 20.5% of all invasive isolates attributable to this ...dominance of serotype 1 and 5 has not changed in our setting over time, although the distribution across the population has reduced ...exception ... See full document
8
Tracking Dengue Virus Intra-host Genetic Diversity during Human-to-Mosquito Transmission.
... infection of an individual human or mosquito host produces a dynamic population of closely-related ...performed whole-genome deep-sequencing of human- and matched ... See full document
21
Genome-Wide Analysis of Simple Sequence Repeats and Efficient Development of Polymorphic SSR Markers Based on Whole Genome Re-Sequencing of Multiple Isolates of the Wheat Stripe Rust Fungus.
... disease of wheat, endangering global food ...number of SSR markers have been developed for Pst. In this study, a total of 4,792 SSR loci were identified using the whole genome ... See full document
18
Evaluation of Methyl-Binding Domain Based Enrichment Approaches Revisited.
... amount of starting material used for the enrichment protocols and whether the amount of DNA in the enriched fraction is sufficient for high quality library ...amount of starting material is of ... See full document
14
Identification, Causes and Consequences Doctoral Programme of Public Health
... Background: Unwarranted variations in healthcare are thought to describe healthcare provision beyond what is clinically necessary and without additional clinical ben[r] ... See full document
178
Chikungunya surveillance in Brazil: challenges in the context of Public Health
... chikungunya surveillance and prevention system in ...study of suspected cases of the disease based on records held on the Notifiable Diseases Information System (Sinan) for the period ...records ... See full document
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