w w w . e l s e v ie r . c o m / l o c a t e / b j i d
The
Brazilian
Journal
of
INFECTIOUS
DISEASES
Original
Article
Phenotypic
and
molecular
characterization
of
resistance
to
macrolides,
lincosamides
and
type
B
streptogramin
of
clinical
isolates
of
Staphylococcus
spp.
of
a
university
hospital
in
Recife,
Pernambuco,
Brazil
Jussyêgles
Niedja
da
Paz
Pereira
∗,
Marcelle
Aquino
Rabelo,
Jailton
Lobo
da
Costa
Lima,
Armando
Monteiro
Bezerra
Neto,
Ana
Catarina
de
Souza
Lopes,
Maria
Amélia
Vieira
Maciel
DepartmentofTropicalMedicine,UniversidadeFederaldePernambuco,Recife,PE,Brasil
a
r
t
i
c
l
e
i
n
f
o
Articlehistory:
Received30January2016 Accepted11March2016 Availableonline16April2016
Keywords: Staphylococcus Clindamycin Inducibleresistance ermgenes
a
b
s
t
r
a
c
t
Introduction:ThereisamechanismofmacrolideresistanceinStaphylococcusspp.whichalso affectsthelincosamidesandtypeBstreptograminscharacterizingtheso-calledMLSB resis-tance,whoseexpressioncanbeconstitutive(cMLSB)orinducible(iMLSB)andisencoded mainlybyermAandermCgenes.ThecMLSBresistanceiseasilydetectedbysusceptibility testingusedinthelaboratoryroutine,butiMLSBresistanceisnot.Therapywithclindamycin incasesofinfectionwithisolatediMLSBresistancemayfail.
Objective:Tocharacterizethephenotypic(occurrenceofcMLSBandiMLSBphenotypes)and molecular(occurrenceofermAandermCgenes)profilesofMLSBresistanceofclinicalisolates ofsusceptibleandmethicillin-resistantStaphylococcusaureusandCNS(coagulase-negative Staphylococcus)frompatientsofauniversityhospital,inPernambuco.
Methods:Theantimicrobialsusceptibilityof103isolateswasdeterminedbythedisk diffu-siontechniqueinMueller–Hintonagarfollowedbyoxacillinscreening.TheiMLSBphenotype wasdetectedbyDtest.IsolateswithcMLSBandiMLSBphenotypesweresubjectedto poly-merasechainreaction(PCR)forthedetectionofermAandermCgenes.
Results:ThecMLSBandiMLSBphenotypeswererespectivelyidentifiedin39(37.9%)andfive (4.9%)isolates.TheiMLSBphenotypewasfoundonlyinfour(10.8%)methicillin-susceptible S.aureusandone(4.5%)methicillin-resistantS.aureus.Inthe44isolatessubjectedtoPCR, four(9.1%)onlyermAgenewasdetected,alowerfrequencywhencomparedtoonlyermC17 (38.6%)geneandtoone(2.3%)isolatepresentingbothgenes.
Conclusion:IntheStaphylococcusspp.analyzed,theermCgenewasfoundmoreoftenthan theermA,althoughtheiMLSBphenotypehadbeenlessfrequentthanthecMLSB.Itwas importanttoperformtheDtestforitsdetectiontoguidetherapeuticapproaches.
©2016ElsevierEditoraLtda.ThisisanopenaccessarticleundertheCCBY-NC-ND license.(http://creativecommons.org/licenses/by-nc-nd/4.0/) ∗ Correspondingauthor.
E-mailaddress:ju-biomed@hotmail.com(J.N.d.P.Pereira). http://dx.doi.org/10.1016/j.bjid.2016.03.003
1413-8670/©2016ElsevierEditoraLtda.ThisisanopenaccessarticleundertheCCBY-NC-NDlicense.(http://creativecommons.org/ licenses/by-nc-nd/4.0/)
Introduction
The increasing prevalence of methicillin resistance in Staphylococcusspp. isa growingproblem.Thishasrenewed interest regarding the use ofmacrolide, lincosamides, and type B streptogramin antimicrobials for the treatment of staphylococcalinfections.Clindamycin,a lincosamide, rep-resents a common choice for some of these infections, particularlyforinfections ofthe skinand soft tissues,and analternativeincaseofintolerancetopenicillinor methi-cillinresistance.1–3InStaphylococcusspp.,oneoftheresistance
mechanisms consists of ribosomal target modification, affectingmacrolides,lincosamides,andtypeBstreptogramins characterizes the so-called MLSB resistance. Its expression
can be constitutive (cMLSB) or inducible (iMLSB) and is
encoded by ermA (erythromycin ribosome methylase) and ermCgenes,whicharethemaindeterminantsofresistancein staphylococci.2,4,5
It is important to know the type of MLSB resistance
forestablishing adequate therapy, sinceStaphylococcus spp. with constitutive resistance present in vitro resistance to all macrolides, lincosamides, and type B streptogramins. In addition, in vivo therapy with clindamycin for Staphy-lococcus spp. infection with inducible resistance can select constitutiveermmutants,resultingintreatmentfailure.3,4,6,7
It is noteworthy that cMLSB resistance is easily detected
by susceptibility testing used in the laboratory routine, while iMLSB resistance is not. Using these detection
methods, Staphylococcus spp. with inducible resistance has in vitro resistance to erythromycin and susceptibility to clindamycin.5,6,8,9
Todetecttheinducibleclindamycinresistancein Staphy-lococcus spp., one of the tests recommended by the CLSI (Clinicaland Laboratory StandardsInstitute) isthe double-diskdiffusiontest(DTest)andwhentheisolatedpresentsuch resistance,theCLSIrecommendsreportingthemasresistant toclindamycin.10Then,dataontheantimicrobial
susceptibil-ityareimportantinthechoiceoftherapyagainstinfections, butfalsesusceptibilityresultscanbeobtainediftheisolates arenotsubjectedtoteststhatdetectinducibleresistanceto clindamycin.11
Studies carried out intwo Brazilian stateswith clinical isolatesofStaphylococcusspp.reportedthecMLSBphenotype
asthe mostfrequent.12,13 Coutinhoet al.13 have also
eval-uated the occurrenceofthe erm genes amongthe isolates analyzed.However,thefrequencyofcMLSBandiMLSB
resis-tancevaries amongdifferenthospitalsand thereare other resistancemechanismsthatconferresistancetoonlyoneor twoclassesoftheMLSBcomplex.14,15
The objective of this study was to characterize the phenotypic (occurrence of cMLSB and iMLSB phenotypes)
and molecular (occurrence of ermA and ermC genes) pro-files of MLSB resistance of clinical isolates of susceptible
and methicillin-resistant Staphylococcus aureus and CNS (coagulase-negative Staphylococcus) from patients of a uni-versityhospitalinPernambuco,Brazil.Obtaininglocaldata relatingtoresistance,maybehelpfulinguidingtherapeutic approaches.
Materials
and
methods
ClinicalisolatesAtotalof103clinicalisolatesweregatheredfromvarious sam-plesfrompatientsinfectedwithS.aureusorSCNofauniversity hospitalofPernambuco,Brazil,duringtheyear2012andwere stored inglycerol (25%)at−20◦C.To verify the purity, the
colonieswereinoculatedintoBrainHeartInfusionbroth(BHI) andafterincubationat37◦Cfor48hwereplatedonbloodagar. Antimicrobialsusceptibilityprofile
Theantibiogramwasperformedbydiskdiffusiontechniquein Mueller–Hintonagar,usingantibioticclindamycin2g, eryth-romycin15g,cefoxitin30g,andoxacillin1g.Theresults were interpretedaccordingtothestandards determinedby CLSI.10
Screeningforoxacillinresistance
Isolateswithresistanceorintermediateresistancetooxacillin and/orcefoxitinweresubmittedtooxacillinscreening,as pro-posedbyRabeloetal.16
Dtest
S.aureusand SCNisolateswithresistancetoerythromycin andsusceptibilityorintermediateresistancetoclindamycin inthe antibiogramwere selected. Forthe executionofthis testadiskof2gofclindamycinwasplacedatadistanceof 15mm–26mmfromtheedgeofadiskof15goferythromycin inaplatecontainingMueller–Hintonagarsowninthesame wayasitwasfortheantibiogram.Afterincubationat35◦Cfor 16–18h,isolatesthatshowednoflatteningoftheinhibition zonearoundtheclindamycindiskwerereportedas suscepti-bletoclindamycin(negativeDtest)andisolatesthatshowed flatteningoftheinhibitionzonearoundtheclindamycindisk adjacenttoerythromycindisk(“D”zone)indicatedinducible clindamycinresistance(positiveDtest).10
ExtractionoftotalDNA
ToexaminethepresenceofermAandemrCgenes,therapid extractionofthetotalDNAofisolatesthatshowedphenotypes MLSBcandMLSBiwasperformedbyamodifiedtechniqueof
thermallysisdirectlyfromthecolony,accordingtoHuetal.,17
afterinoculationofacolonyofeachisolateinto5mLofBHI andincubatedat37◦Cfor24h.
Polymerasechainreaction(PCR)conditions
PCRwasperformedusingtheprimersdescribedbyLinaetal.18
for ermAand ermCgenes. For the detection ofermA gene, each amplificationreactionwaspreparedinafinalvolume of25Lforeachtubeandincludes:1L(40ng)oftotalDNA, 1L(20pmol)ofeachprimer,0.6Lofdeoxyribonucleotide triphosphate (dNTP) (8mM), 5.0L ofbuffer (5×), 1.5Lof
Table1–Susceptibilityprofiletoerythromycinandclindamycinofsusceptibleandmethicillin-resistantS.aureusand CNS. Phenotypes MSSA n(%) MRSA n(%) MSCNS n(%) MRCNS n(%) Total n(%)
ERY-S,CLI-S(susceptible) 25(67.6) 5(22.7) 4(28.6) 7(23.3) 41(39.8) ERY-S,CLI-I 1(2.7) 0(0) 1(7.1) 0(0) 2(1.9) ERY-S,CLI-R 0(0) 0(0) 0(0) 0(0) 0(0) ERY-I,CLI-S 1(2.7) 0(0) 2(14.3) 0(0) 3(2.9) ERY-I,CLI-I 0(0) 0(0) 0(0) 0(0) 0(0) ERY-I,CLI-R 0(0) 0(0) 0(0) 1(3.3) 1(1) ERY-R,CLI-R(cMLSB) 4(10.8) 15(68.2) 3(21.4) 17(56.7) 39(37.9)
ERY-R,CLI-S/I,+DTest(iMLSB) 4(10.8) 1(4.5) 0(0) 0(0) 5(4.9)
ERY-R,CLI-S/I,–TestD(MSB) 2(5.4) 1(4.5) 4(28.6) 5(16.7) 12(11.6)
Total 37(35.9) 22(21.4) 14(13.6) 30(29.1) 103(100) ERY,erythromycin;CLI,clindamycin;S,susceptible;I,intermediary;R,resistant;MSSA,methicillin-susceptibleStaphylococcusaureus;MRSA, methicillin-resistantS.aureus;MSCNS, methicillin-susceptiblecoagulase-negativeStaphylococcus; MRCNS,methicillin-resistant coagulase-negativeStaphylococcus;MLSB,macrolides,lincosamidesandtypeBstreptogramins;cMLSB,phenotypeofconstitutiveMLSBresistance;iMLSB,
phenotypeofinducibleMLSBresistance;MSB,phenotypeofresistancetomacrolidesandtypeBstreptogramins.
MgCl2 (25mM), 0.4Lof TaqDNA polymerase (5U).For the
detectionofermCgene,eachamplificationreactionwas pre-paredinthesamemannerasforermAgene,exceptinrelation tothequantityofTaqDNApolymerase(5U),whichinthis reac-tionwas0.3L.Amplificationreactionswereperformedinthe thermocycleratthefollowingconditions:30cyclesof1minat 94◦Cinthedenaturingstep,30sat49◦Cintheannealingstep and30sat72◦Cintheextensionstep,accordingtothe condi-tionsdescribedbyFranc¸aetal.19withmodification.InallPCR anegativecontrolwasincluded,correspondingtoatube con-tainingallcomponentsofthemixturetowhichtemplateDNA wasnotadded.IdentifiedpositiveisolatesfortheermAand ermCgeneswereusedaspositivecontrols.ThePCRproducts weresubjectedtoelectrophoresison1.5%agarosegelin0.5× TBEbuffer.Theseproductswerestainedwithblue,visualized onanultraviolettransilluminatorandphotodocumented. SequencingofermAandermCgenes
APCR productpositive forthe ermAand ermCgenes were purifiedthroughthekit Wizard® SVGeland PCRClean-Up System(Promega),accordingtomanufacturer’sprotocoland then,quantifiedbyspectrophotometry.Thereaftertheywere submittedtosequencingandanalysisoftheresultswas per-formedthroughthesoftwaresChromasLite2.1.1,BasicLocal Alignment Search Tool(BLAST), and ExpertProtein Analy-sisSystem (ExPASy).The analyzedsequences of ermAand ermCgenesweredepositedintheGenBankwiththefollowing accessnumbers,respectively:KT599443andKU232395.
Results
Fifty-nine(57.3%)clinicalisolatesofS.aureusand44(42.7%) of SCN were analyzed, totaling 103 isolates. Of these, 37 (35.9%),22(21.4%),14(13.6%),and30(29.1%)wereclassifiedas methicillin-susceptibleS.aureus(MSSA),methicillin-resistant S.aureus(MRSA),methicillin-susceptiblecoagulase-negative Staphylococcus (MSCNS) and methicillin-resistant coagulase-negativeStaphylococcus(MRCNS),respectively(Table1).
Fig.1–PositiveDtest,showingtheflatteningofthe inhibitionzonearoundtheclindamycindiskadjacentto erythromycindisk(called“D”zone).
Thesusceptiblephenotype(ERY-S,CLI-S)wasdetectedin25 (67.6%),five(22.7%),four(28.6%),andseven(23.3%)ofMSSA, MRSA, MSCNSandMRCNS,respectively(Table1).The phe-notypecMLSB(ERY-R,CLI-R)wasdetectedrespectively,infour
(10.8%)15(68.2%),three(21.4%),and17(56.7%)ofMSSA,MRSA, MSCNSandMRCNS.TheiMLSBphenotype(ERY-R,CLI-S,
pos-itiveDtest)(Fig.1)wasfoundinonlyfour(10.8%)oftheMSSA andinone(4.5%)oftheMRSA.TheMSBphenotype(ERY-R,
CLI-S,negativeDtest)wasdetectedintwo(5.4%),one(4.5%),four (28.6%),andfive(16.7%)ofMSSA,MRSA,MSCNS,andMRCNS, respectively(Table1).
FortheidentificationoftheermAandermCgenes,44 iso-lateswithcMLSBandiMLSBphenotypesunderwentPCR.Four
(9.1%) isolatesshowed onlyermAgene, 17(38.6%)hadonly ermCgene,one(2.3%)hadbothgenes,and22(50%)didnot havethereferredgenes(Table2).
Discussion
Inthisstudy,thefrequencyofMSSA(25;67.6%)wasgreater thanMRSA(five;22.7%)andofMSCNS(four;28.6%)waslower
Table2–DistributionofermAandermCgenesamong
Staphylococcusspp.isolateswithMLSBresistance.
Genes Isolates(%) ermA 4(9.1) ermC 17(38.6) ermA+ermC 1(2.3) None 22(50.0) Total 44(100.0)
thanMRCNS(seven;23.3%).InastudyconductedinIndia,313 isolatesofStaphylococcus spp.there were 83(64.84%) MSSA and45(35.15%) MRSA,inlinetothepresent study;in con-trast,therewere124(67.02%)MSCNSand61(32.97%)MRCNS.5
Atotalof1687isolatesofStaphylococcusspp.investigatedin Turkeyconsistedof419(24.8%)MSSAand464(27.5%)MRSA, unlike this study, and the rest of the isolates, similar to thisstudy,consistedof196 (11.6%)MSCNSand608 (36.1%) MRCNS.11
The susceptible phenotype (ERY-S, CLI-S) found in 41 (39.8%)isolates in this study prevailed amongthe isolates tested.Thisphenotypewasalsoprevalentinstudiescarried outinIndia,Libya,andTurkeywherethereferredphenotype wasdetectedin192(51.5%),87(54.7%),and688(40.8%)isolates, respectively.11,20,21
Inthisstudy,the39(37.9%)cMLSBphenotypeisolates
pre-vailedoverthefive(4.9%)iMLSBphenotypeandoverthe12
(11.6%)MSB phenotype resistant tomacrolides and type B
streptogramins,whichisconsistentwithotherstudies con-ductedinBrazil.12,13,22 Oneofthestudieswasperformedin
SãoPaulorevealed37(25.17%)andnine(6.12%)isolateswith cMLSBandiMLSBphenotypes,respectively,whiletheMSBwas
notdetected.12Otherstudieswereconductedinthestateof
RioGrandedoSul;oneofthemidentified71(46.7%),five(3.3%), andfive(3.3%)isolateswithcMLSB,iMLSB,andMSB
pheno-types,respectively.13Theotherstudydetected25(17.9%),11
(7.9%),and two(1.4%)isolateswithcMLSB,iMLSB,and MSB
phenotypes,respectively.22
InthisstudythecMLSBphenotypeprevailedamongthe
iso-latesresistanttomethicillin,whichisconsistentwithstudies conductedinothercountries3,5,11,15,21aswellinBrazil.12,22
TheMSBphenotypewasmorefrequent(12;11.6%)thanthe
iMLSB(five;4.9%)inthisstudy.Divergingfromthisfinding,the
studydonebyKumaretal.8inIndiafoundthesamefrequency
(33;16.9%)ofMSBandiMLSBphenotypesamongtheS.aureus
isolatesanalyzed.Merino-Díazetal.23inSpainidentifiedthe msrAgeneinallStaphylococcusspp.isolateswithMSB
pheno-type.InStaphylococcusspp.thisgeneisresponsibleforanefflux mechanismwhichconfersresistancetomacrolidesandtype Bstreptogramins,butnottoclindamycin.5,24
OnlyS.aureusshowedthe iMLSBphenotypeand its
fre-quencywashigheramongtheMSSA(four;10.8%)thanamong the MRSA (one; 4.5%) in this study. Astudy conducted in ChicagodetectedtheiMLSBphenotypein59(20%)MSSA
iso-latesandin14 (7%)MRSAisolatesinonehospital,andthe iMLSBphenotypein94(19%)andin30(12%)MSSAandMRSA
isolates,respectively,inanother hospital.25In astudy
con-ductedinTurkey,eight(5.8%)MSSAisolatesandtwo(1.7%) MRSAisolatespresentedtheiMLSBphenotype.26Inthestudy
conductedinSãoPaulo,theiMLSBphenotypewasobserved
inseven(6.73%)MSSA and intwo(4.65%)MRSAisolates.12
These data from previouslyreported studiesare similar to the findings ofthe present study.However,thereareother studiescarriedoutabroad,inwhichtheiMLSBphenotypewas
prevalentamongMRSAisolates.3,8,15,27,28
Relevant datafor antimicrobialsusceptibility are signif-icant inestablishing anappropriatetherapy; therefore, the availabilityoftheDtestresultsareimportant.20,25Reporting
anisolatedStaphylococcusspp.assusceptibletoclindamycin withoutverifyingifitpresentsinducibleresistance,maylead toinadequatetherapywiththisdrug.Incontrast,anegative resultforinducibleresistancetoclindamycin,confirmsthe susceptibilityofthisantimicrobial,providingaverygood ther-apeuticoption.3,8
In this study, the ermA and ermC genes were detected individuallyinfour(9.1%)and17(38.6%)isolateswithMLSB
resistancephenotypes,respectively.Insomestudies,contrary tothis,theermAgenewasidentified morefrequentlythan theermCgene,asinastudyconductedinIran,inwhichthe ermAandermCgeneswerefoundin76(60.3%)and69(54.8%)S. aureusisolates,respectively.29Schmitzetal.,30when
analyz-ing S.aureusisolatesfrom 24Europeanuniversityhospitals detectedthe ermAgenein571 (67%)isolatesand theermC in192(23%).InKorea,Junget al.31identified among280S. aureusisolates,theermAgenein250andtheermCin14 iso-lates.InIran,Moosavianetal.32detectedtheermAandermC
genes,respectivelyin41.1%and17.7%oftheS.aureusisolates studied.
Inotherstudies,consistentwiththis,theermCgenewas predominantrelativelytotheermAgene,asinastudyfrom Spain,inwhichtheermCgenewasmorefrequentlydetected, in both S. aureus and SCN isolates with constitutive and induciblephenotypes.23InGreece,Spiliopoulouetal.33
iden-tifiedtheermAandermCgenesin22%and70%ofS.aureus isolates,respectively.Vallianouetal.34havereportedthatthe ermCgenewasfoundmorefrequentlyamongS.aureusand SCNisolatesofauniversityhospitalalsoinGreece.
Inthisstudy,one(2.3%)isolatepresentedbothermAand ermCgenes.TheassociationofthesegenesinStaphylococcus spp.isolates,29,35,36wasalsoobservedinotherstudies.
TheermBgenewasnotinvestigated,becauseitisusually detectedinStaphylococcusspp.isolatesofanimalorigin13,23,30
anditisspreadmainlybetweenstreptococciandenterococci.4
InRioGrandedoSul,Coutinhoetal.13reportedlowfrequency
of the ermB gene. They foundthat among152 Staphylococ-cusspp.isolatesanalyzed,77hadoneormoreermgene,the ermA, ermC,and ermBgeneswere foundrespectivelyat49, 29,and threeisolatesand,thecombination ofthesegenes was foundinfourisolates,13 datawhich differedfrom this
study.However,inaworkdevelopedinTexas,withS.aureus isolatesofpediatricorigin,amongthe67isolatesevaluated, the ermB genewas identified in31 ofthese,and the ermA and the ermC genes were detected in 12 and 24 isolates, respectively.37
Thenitwaspossibletoobservethefrequencyvariationof thephenotypesoftheMLSBresistanceandoftheermgenes
amongsthospitalsandgeographicregions,alreadyreportedby otherauthors.13,15,21,29Therefore,theimportanceof
Thegood correlationbetweenthe phenotypicand geno-typicmethodsallowsustoinferthemechanismofresistance to erythromycin and clindamycin, to establish the most appropriateantimicrobialtreatmentandtoappreciatethe epi-demiologicaldifferencesintheirdistribution.23
Conclusion
TheermAgenewaslessfrequentthantheermCgeneamong Staphylococcus spp. isolates with cMLSB and iMLSB
pheno-types.DespitethelowerfrequencyofiMLSBthancMLSBand MSB phenotypes, it isimportant to perform the D test in ordertoidentifyitandguidetherapeuticprocedures.Asthe phenotypic and molecular data about a particular mecha-nismofantimicrobialresistancevarybetweenhospitalsand geographic regions, obtaining local data is useful, since it canbe helpfultoemphasize the importanceofthe imple-mentationofproceduresthataimatcontrollingthespread of this mechanism, in the hospital where the study was conducted.
Conflicts
of
interest
Theauthorsdeclarenoconflictsofinterest.
Acknowledgment
ThisstudywassupportedbytheNationalCounselof Techno-logicalandScientificDevelopment(CNPq).
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