CONTENTS
Supplement 13
Volume 10
2009
BMC
Bioinformatics
Editor-in-Chief
Melissa Norton, MD
Biology Editor
Penny Webb, PhD
In-house Editor
Tim Sands
BMC Bioinformatics
(www.biomedcentral.com/bmc bioinformatics) is an open access journal published by BioMed Central Ltd. The journal publishes original peer-reviewed research articles in all aspects of computational methods used in the analysis and annotation of sequences and structures, as well as all other areas of computational biology.
BMC Bioinformatics
(ISSN 1471-2105) is indexed/tracked/covered by PubMed, MEDLINE, BIOSIS, CAS, Scopus, EMBASE, Thomson Reuters (ISI) and Google Scholar.
Contact BioMed Central
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Highlights from the Fifth International Society for Computational
Biology (ISCB) Student Council Symposium
Stockholm, Sweden
June 27 - July 2, 2009
Edited by Thomas Abeel
www.biomedcentral.com/1471-2105/10?issue=S13
I1 Highlights from the 5thInternational
Society for Computational Biology Student Council Symposium at the 17thAnnual
International Conference on Intelligent Systems for Molecular Biology and the 8th
European Conference on Computational Biology
Thomas Abeel, Jeroen de Ridder et al.
O1 KIRMES: Kernel-based identification of regulatory modules in euchromatic sequences
Sebastian J Schultheiss,Wolfgang Busch et al.
O2 Paired-end read length lower bounds for genome re-sequencing
Rayan Chikhi and Dominique Lavenier
O3 Prediction of super-secondary structure in
α
α-helical and ββ-barrel transmembrane proteins
Van Du Tran, Philippe Chassignet et al.
O4 Core stemness mechanisms revealed through homology
Martina Koeva, Camilla Forsberg et al.
O5 Functionally informative tag SNP selection using a pareto-optimal approach: playing the game of life
Phil Hyoun Lee, Jae-Yoon Jung et al.
O6 Looking for chromosome spatial organization rules in microarray gene expression data
Teresa Szczepinska and Krzysztof Pawlowski.
O7 Visualization of large microarray experiments with space maps
Nils Gehlenborg and Alvis Brazma
P1 Probabilistic retrieval and visualization of biologically relevant microarray experiments
José Caldas, Nils Gehlenborg et al.
P2 PAUL: Protein structural alignment using integer linear programming and Lagrangian relaxation
Inken Wohlers, Lars Petzold et al.
P3 A method for validation for clustering of phenotypic gene knockdown profiles using protein-protein interactions information
Nikolay Samusik,Yannis Kalaidzidis et al.
P4 Phylogenomic inference of functional divergence
Tom A Williams, Brian E Caffrey et al.
P5 Transcript quantification with RNA-Seq data
Regina Bohnert, Jonas Behr et al.
P6 Structure and function analysis of flexible alignment regions in proteins
Walter Pirovano, Anneke van der Reijden et al.
P7 Computational methods to identify novel methyltransferases
Tanya C Petrossian and Steven G Clarke