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Functionally informative tag SNP selection using a pareto-optimal approach: playing the game of life

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CONTENTS

Supplement 13

Volume 10

2009

BMC

Bioinformatics

Editor-in-Chief

Melissa Norton, MD

Biology Editor

Penny Webb, PhD

In-house Editor

Tim Sands

BMC Bioinformatics

(www.biomedcentral.com/bmc bioinformatics) is an open access journal published by BioMed Central Ltd. The journal publishes original peer-reviewed research articles in all aspects of computational methods used in the analysis and annotation of sequences and structures, as well as all other areas of computational biology.

BMC Bioinformatics

(ISSN 1471-2105) is indexed/tracked/covered by PubMed, MEDLINE, BIOSIS, CAS, Scopus, EMBASE, Thomson Reuters (ISI) and Google Scholar.

Contact BioMed Central

supplements@ biomedcentral.com

Highlights from the Fifth International Society for Computational

Biology (ISCB) Student Council Symposium

Stockholm, Sweden

June 27 - July 2, 2009

Edited by Thomas Abeel

www.biomedcentral.com/1471-2105/10?issue=S13

I1 Highlights from the 5thInternational

Society for Computational Biology Student Council Symposium at the 17thAnnual

International Conference on Intelligent Systems for Molecular Biology and the 8th

European Conference on Computational Biology

Thomas Abeel, Jeroen de Ridder et al.

O1 KIRMES: Kernel-based identification of regulatory modules in euchromatic sequences

Sebastian J Schultheiss,Wolfgang Busch et al.

O2 Paired-end read length lower bounds for genome re-sequencing

Rayan Chikhi and Dominique Lavenier

O3 Prediction of super-secondary structure in

α

α-helical and ββ-barrel transmembrane proteins

Van Du Tran, Philippe Chassignet et al.

O4 Core stemness mechanisms revealed through homology

Martina Koeva, Camilla Forsberg et al.

O5 Functionally informative tag SNP selection using a pareto-optimal approach: playing the game of life

Phil Hyoun Lee, Jae-Yoon Jung et al.

O6 Looking for chromosome spatial organization rules in microarray gene expression data

Teresa Szczepinska and Krzysztof Pawlowski.

O7 Visualization of large microarray experiments with space maps

Nils Gehlenborg and Alvis Brazma

P1 Probabilistic retrieval and visualization of biologically relevant microarray experiments

José Caldas, Nils Gehlenborg et al.

P2 PAUL: Protein structural alignment using integer linear programming and Lagrangian relaxation

Inken Wohlers, Lars Petzold et al.

P3 A method for validation for clustering of phenotypic gene knockdown profiles using protein-protein interactions information

Nikolay Samusik,Yannis Kalaidzidis et al.

P4 Phylogenomic inference of functional divergence

Tom A Williams, Brian E Caffrey et al.

P5 Transcript quantification with RNA-Seq data

Regina Bohnert, Jonas Behr et al.

P6 Structure and function analysis of flexible alignment regions in proteins

Walter Pirovano, Anneke van der Reijden et al.

P7 Computational methods to identify novel methyltransferases

Tanya C Petrossian and Steven G Clarke

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