h ttp : / / w w w . b j m i c r o b i o l . c o m . b r /
Environmental
Microbiology
Ligninolytic
fungus
Polyporus
sp.
S133
mediated
metabolic
degradation
of
fluorene
Zainab
Mat
Lazim
a,b,
Tony
Hadibarata
a,b,∗aCentreforEnvironmentalSustainabilityandWaterSecurity(IPASA),ResearchInstituteforSustainableEnvironment(RISE),
UniversitiTeknologiMalaysia,Skudai,Johor,Malaysia
bDepartmentofEnvironmentalEngineering,FacultyofCivilEngineering,UniversitiTeknologiMalaysia,Johor,Malaysia
a
r
t
i
c
l
e
i
n
f
o
Articlehistory:
Received11July2015
Accepted22December2015
Availableonline23April2016
AssociateEditor:CynthiaCanêdoda
Silva Keywords: Metabolites Ligninolyticenzymes Polyporussp.S133 Non-ionicsurfactants Solubilization
a
b
s
t
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Thisstudyaimedtoinvestigatetheimpactofnonionicsurfactantsontheefficacyoffluorine
degradationbyPolyporussp.S133inaliquidculture.Fluorenewasobservedtobedegraded
initsentiretybyPolyporussp.S133subsequenttoa23-dayincubationperiod.Thefastest
cellgrowthratewasobservedintheinitial7daysintheculturethatwassupplemented
withTween80.Thedegradationprocesswasprimarilymodulatedbytheactivityoftwo
ligninolyticenzymes,laccaseandMnP.Thehighestlaccaseactivitywasstimulatedbythe
additionofTween80(2443U/L)followedbymixedsurfactant(1766U/L)andBrij35(1655U/L).
UV–visspectroscopy,TLCanalysisandmassspectrumanalysisofsamplessubsequentto
thedegradationprocessintheculturemediumconfirmedthebiotransformationoffluorene.
Twometabolites,9-fluorenol(max270,tR8.0minandm/z254)andprotocatechuicacid(max
260,tR11.3minandm/z370),wereidentifiedinthetreatedmedium.
©2016SociedadeBrasileiradeMicrobiologia.PublishedbyElsevierEditoraLtda.Thisis
anopenaccessarticleundertheCCBY-NC-NDlicense(http://creativecommons.org/
licenses/by-nc-nd/4.0/).
Introduction
Fungalbiotransformationisconsidered asoneofthe most
importantmethodsforremovingpollutantfromthe
ecosys-tem. In case oforganic pollutants, the primary issue that
impedes their clearance is their characteristically low
sol-ubilityinwater. Theinherenthydrophobicnature ofthese
organic pollutants results intheir selective partitioning in
the soil matrix such that their bioavailability is seriously
∗ Correspondingauthor.
E-mail:hadibarata@utm.my(T.Hadibarata).
compromised. This in turn jeopardizes the success of the
bioremediation treatment. Thereis anurgentneed forthe
developmentofalternativetreatmentmodalitieswhichwill
help remove these pollutants from the environment by
makingthemmoreavailableforthedegradationby
microor-ganisms. Surfactant-mediated biodegradation is one such
promisingprocess.Thismethodhasthepotentialtoincrease
the solubility of hydrophobic compounds, such as PAHs,
thereby increasingtheirbioavailabilityand expeditingtheir
removal from the environment.1–3 Previous studies have
http://dx.doi.org/10.1016/j.bjm.2016.04.015
1517-8382/©2016SociedadeBrasileiradeMicrobiologia.PublishedbyElsevierEditoraLtda.ThisisanopenaccessarticleundertheCC
shownthatdependingonthesurfaceofthesubstanceand
thetypeofthesurfactantused,theprocessofsurfactant
sorp-tiontomicroorganismscanresultineitheranincreaseora
decreaseinadhesion.4
Micellesarethesolutionaggregatesformedbysurfactant
moleculesinwaterwhentheirconcentrationisabovethe
crit-icalmicelleconcentrationorCMC.Micelleshavedualnature:
their hydrophilic outer surface is exposed to the solvent
whereasthecoreiscomposedofhydrophobicmoieties.
Sev-eralresearchersareactivelyconductingstudiesinanattempt
toinvestigatetheeffectofsurfactantsonmicrobial
transfor-mationofpollutants;allthesestudiesarebasedonsurfactant
utilization atconcentrationsabove CMC.Hydrocarbons are
known to be partitioned into the hydrophobiccore of the
micelles.5,6But,itiswellestablishedthatextentof
solubili-zationisinfluencedbyamultitudeoffactorssuchastypeand
concentrationofthesurfactant,theinteractionbetweenthe
surfactantandsoil,thecontacttimebetweenthe
contami-nantandsoilaswellasthehydrophobicityofthecompound
inquestion.7,8
Fluorene is a three-ring PAH found ubiquitously in the
environment.9 It isproduced as a result ofan incomplete
combustionof certain products. Fluorene leaches into the
groundwatereitherasaresultofdirectcontaminationfrom
pollutedsurfacewatersorindirectlythroughthesoil.Fluorene
is not considered as a genotoxic agent but the
carcino-genic aspectof its molecularstructure hasbeen popularly
used as an indicator for the evaluation ofPAH-containing
pollutants.10White-rotfungihavebeenfrequentlyemployed
forthedegradationofvariousorganicenvironmental
pollut-ants.Theirexceptionalcapacitytodegradeandbiotransform
organiccontaminantscanbeattributedtotheproductionof
ligninolyticenzymessuchasMnP,LiP,laccase,andversatile
peroxidase.11–13Theligninolyticenzymesareresponsiblefor
thedepolymerizationofPAHs,whichresultsinthe
produc-tionofvarioustypesofphenol.Theyalsooxidizesubstrates
inthepresenceofasuitableco-substrate.14Extensivestudies
havebeenundertakeninordertoinvestigatethepotentialof
white-rotfungustodegradePAHs.15,16 However,theimpact
ofsolubilizationoffluorenewithsingleandmixednonionic
surfactantsonthedegradationrateremainsunexplored.
Thisstudy attempts tofill the above mentioned lacuna
byevaluatingthebiodegradationoffluorenebythePolyporus
speciesinliquid culturesin the presenceoftwo synthetic
surfactants.Ourstudyalsoquantifiestheresultantbiomass
produced,the extracellular enzymes and the glucose
con-sumptioninvolvedintheprocess.Furthermore,inanattempt
tocomprehensivelystudythedegradationprocess,
metabo-litesformedduringfluorenedegradationhavebeenidentified
andcharacterizedusingavarietyofchromatographic
tech-niques.Twononionicsurfactants,Tween80andBrij35,were
chosen to study the influence of the surfactant structure
onthebiodegradationandbiotransformationoffluoreneby
thefungal biomass.Studies haveestablishedthat nonionic
surfactants are more effective on account of their higher
adsorptioncapacityinclayfractionsascomparedtoanionicor
cationicsurfactants.6Therelationshipbetweenenzyme
activ-ity, glucose consumption, fluorene utilization and biomass
productioninthepresenceofTween80andBrij35wasalso
established.Thedatageneratedbythisstudywillcontribute
Table1–Structureandphysical–chemicalcharactersof
fluorene.
Molecularstructure
Molecularformula C13H10
Appearance Whitecrystal
Molecularweight 166.22 Density 1.202g/mL Meltingpoint 117◦C Boilingpoint 295◦C Aqueoussolubility (20–25◦C) 1.98mg/L Octanol–waterpartition coefficient(logL/kg) 4.0155
towarddefininganewapproachforbiotransformationofPAHs byimprovingourunderstandingabouttheinfluenceof surfac-tantsintheprocess.Itishopedthattheresultsofourstudy willbeasignificantcontributiontothefieldofbiodegradation especiallysurfactantenhancedbiodegradation(Table1).
Materials
and
methods
Chemicalsandmicroorganisms
Fluorene and an internal standard,4-chlorobiphenyl, were
obtainedfromSigma–Aldrich(Milwaukee,WI).Bothwere
sup-pliedat>97%purity.NonionicsurfactantssuchasBrij35and
Tween80,andextractionsolventssuchasethylacetateand
dichloromethanewereobtainedfromAcrosChemicals.Malt
extract as well as other chemicals required forliquid
cul-turewereprocuredfromDifco(Detroit,USA).Allthesolutions
obtainedorpreparedutilizedanalyticalgradeandhigh-purity
reagents. Thefungus usedin the study was isolated from
Matsuyama,Japan.ThePolyporussp.S133wascultivatedin
a100-mLErlenmeyerflaskcontainingmineralsaltmedium
(MSM).ThecompositionofthegrowthmediumMSMisgiven
inTable2.ThesterilityofMSMwasensuredbyautoclaving
the growthmediumpriortouse.Fluorene (10mg/L),Tween
80andBrij35solutionsweresterilizedbyvacuumfiltration
inordertopreventanyconversionofthecompounds.15,17For
estimationofenzymeactivity,theculturewassupplemented
withthedesiredamountoffluoreneandincubatedforspecific
timeintervals.Allexperimentswereconductedintriplicate.
Enzymeassaysandbiomassdetermination
The enzymeanalysis of the funguswas conducted as per
the protocoldescribed earlier.18 Laccaseactivity was
deter-minedbyABTSoxidationandassayedspectrophotometrically
at420nm.MnPactivitywasdeterminedbytheoxidationof
malonate anddimethoxyphenol inan MnSO4 solution and
assayedbymonitoringchangesinabsorbanceat270nm.The
enzymeproductionwasexpressedinUL−1.Biomass
produc-tion was estimatedbycentrifugingthe culturefollowedby
filtrationthroughaWhatmanNo.1filterpaper.Thebiomass
Table2–Concentrationsofmineralsaltmedia(MSM)constituents.
MSMconstituents Concentration(g/L) Traceelement Concentration(mg/L)
Maltextract 10 FeSO4·7H2O 12
Glucose 10 MnSO4·7H2O 3 KH2PO4 2 ZnSO4·7H2O 3 MgSO4·7H2O 1 CoSO4·7H2O 1 CaCl2·2H2O 0.5 (NH4)6Mo7O24·4H2O 1 Ammoniumtartrate 0.5 Traceelement 10mL Solubilizationtest
The solubilization test was performed as described previously.19,20 Single nonionic surfactants were used in
the following concentrations: 0.1, 0.5, 1, 2, 4mM. Mixed
surfactantsolutions(Tween80andBrij35)werepreparedat
sameconcentrationina1:1ratio.
Instrumentalanalysis
Agilent 5975E FID GC-MS (DB–1 capillary column; 0.25m
ID;0.25mmdiameter;30mlength)wasusedtoidentifyand
characterize the metabolites present in the incubated
cul-ture.Asdescribedinourpreviousstudy,trimethylchlorosilane
wasusedinthesilylationprocedureemployedfordetecting
samplescontaininghydroxylandcarboxylgroups.18TheGC
temperaturewasmaintainedasfollows:initial70◦C(1min),
increasedatthe rateof18◦Cmin−1 till150◦C,increasedat
therateof28◦Cmin−1 till330◦C,heldat330◦Cfor10min.
Theinjector and interfacetemperatures were set at260◦C
withasplitlesstimeof2min.Theinjectionconcentrationwas
1Linthesplitlessconditionandflowrateoftheheliumwas
adjustedto1mL/min.TheEIionizationmodewasusedwith
electronenergyof1.3eVandamassrangeof50–500amu.The
massspectraofthesampleswerecomparedwithauthentic
standardcompoundsaswell asthedatabaselibrary (Wiley
275L).21
Results
and
discussion
Solubilizationoffluorene
Fig.1showsthechangeinthesolubilityoffluoreneasaffected
bytheadditionofsingleandmixednonionicsurfactants.It
wasobservedthatthesolubilityoffluorenewassignificantly
enhancedbyadditionofsurfactantsand thatthesolubility
ofthepollutantwas directlyproportional tothesurfactant
concentrations.Thehighestsolubilitynotedinthisstudywas
achievedbytheadditionofTween80(39.4mgL−1);the
addi-tion ofmixed solutions resultedin amoderate rise inthe
solubility,whereasthelowestsolubilityvalueswereobserved
uponadditionofBrij35(20.4gL−1).Itishypothesizedthatthe
additionoffluoreneincombination withthenonionic
sur-factantsolutionfacilitatesthe formationofmixedmicelles
whichinturnimprovesthecontactbetweenmicroorganisms
andsurfactant.
BiodegradationoffluorenebyPolyporussp.S133
Itisevidentfromthedataavailableintheliteraturethat
fluo-reneislikelytobeabsorbedontothefungalbiomasssurface
priortobeingaccumulated,degraded,andmetabolizedbythe
fungus.Inordertoidentifytheimpactofsingleandmixed
sur-factantsonfluoreneremoval,thegrowthmediumofPolyporus
sp.wassupplementedwiththeadditionofTween80,Brij35,
andmixturesofTween80andBrij35.S133culturewas
under-takeninordertoestimatebothbiomassproductionaswell
asfluorenedegradation.Resultsindicatedthatboththecell
growthaswellasthedegradationoffluorenewasinfluenced
bythepresenceofsurfactants(Fig.2).AsisshowninFig.2,
thepresenceofTween80significantlyenhancedtheremoval
offluoreneaswellasthebiomassproduction.Fluorenewas
foundtobedegradedinentiretybyPolyporussp.S133afteran
incubationperiodof23d.Thefastestgrowthratewas
expe-riencedintheinitial7days(0.6gL−1 perday)intheculture
thatwassupplementedwithTween80.Tween80increased
thesorptionextentandnodistinctionwasfoundbetween
sur-factantandmycelia.Fig.2suggeststhattheadditionofTween
80andmixedsurfactantsenhancedthefluorenedegradation
andbiomassproductionbyPolyporussp.S133.Itwasobserved
afterthe23-dayincubationperiodthatthecellularproduction
andgenerationslowlydecreasedlargelybecausemostofthe
fluorenehadalreadybeendegraded.Theresultsshowthatthe
maximumfluorenedegradationwasobservedfortheTween
80culture(0.4mgperday),which0.2and0.27mg/dcompared
towasmixedsurfactantandBrij35.
0 10 20 30 40 4 3 2 1 0 Concentration (mM) S olubilit y (mg /L ) Tween 80 Brij 35 Tween 80-Brij 35
Fig.1–Solubilizationoffluorenebysingleandmixed
40
A
B
C
5 4 3 2 1 0 5 4 3 2 1 0 5 4 3 2 1 0 30 20 10 0 40 30 20 10 0 40 30 20 10 0 0 5 10 15 20 Incubation time (d) Biomass production (g/L)Fluorene residue Biomass production
Fluorene residue
(mg/L)
25 30 35
Fig.2–Utilizationoffluoreneandbiomassproductionin
singleandmixedsurfactant:Tween80(A);Brij35(B);
Tween80–Brij35(C).
Dioxygenase,peroxidaseandlaccaseenzymesplaya
crit-ical role in the biotransformation of fluorene by Polyporus
sp.S133.Enzymessuchas1,2-dioxygenase,2,3-dioxygenase,
MnP, LiP, and laccase were studied with the aim of
gain-ingadditionalinsightintothemechanismofdecolorization
(Table3).Itwasnotedthatthedegradationprocesswas
pri-marilydeterminedbytheactivityoftwoligninolyticenzymes:
Table3–EnzymedetectionofPolyporussp.S133at
initialdegradation(10d).
Enzyme Activity(U/L)
Manganeseperoxidase 45.4
Ligninperoxidase 1.3
Laccase 113.8
1,2-Dioxygenase 0.2
2,3-Dioxygenase 0.5
Valuesaremeansofthreeexperiments.
2500 Glucose Laccase MnP
A
B
C
2000 1500 1000 500 0 5 4 3 2 1 0 5 4 3 2 1 0 5 5 10 15 20 Incubation time (d) Glucose (g/L) Laccase (U/L); Mnp (U/L) 25 30 35 4 3 2 1 0 0 2500 2000 1500 1000 500 0 2500 2000 1500 1000 500 0Fig.3–Effectofnon-ionicsurfactantonenzymeactivities andglucoseconsumption.Tween80(A);Brij35(B);Tween 80–Brij35(C).
laccaseand MnP.In order toassay the impactofnonionic detergents on the enzyme activity as well as on the fluo-renedegradationprocess,activityoftheenzymewasplotted againstglucoseconsumptionfordifferentconcentrationsof thesurfactants(Fig.3).
Itwasobservedthatforallsurfactants,themaximum
lac-case production was seen on day 30 of the incubation; it
wasalsoseenthattheactivitydeclinedsignificantlyatday
15 forBrij 35 andatday 23 formixedsurfactants. Growth
mediumsupplementedwithTween80exhibitedthehighest
activity(2443UL−1)forlaccasefollowedbythemixed
surfac-tant (1766UL−1)and lastlybyBrij35 (1655UL−1). Asimilar
analysis of the MnP activity with varying combinations of
thesurfactantprovedthatMnPactivitydecreasedafter7–15
days ofincubation and the downward trend continued till
the endoftheexperimentalperiod.Theglucose
consump-tion wassignificantlyhigh inthe first7daysofincubation
but was observedtodecrease slowlyafterthat tillthe end
oftheexperimentalperiod.Thehighestconsumptionof
glu-cosewasseeninthegrowthmediumsupplementedbyBrij
35 (3.8gL−1)after30daysofincubation. Fromthis resultit
canbeconcludedthatwhenthegrowthmediumis
fungalgrowth.Thefunctionofglucoseintheculturewasto
inducetheenzymaticsystemofthefungus.Fromtheresults
obtainedabove,wetheorizethattheproductionofligninolytic
enzymessuchaslaccaseandperoxidasewassuppressedby
additionoffluoreneandsurfactant.Ourresultsareinaccord
withapreviousstudythatanalyzedPAHdegradationby
var-iouswhite-rotfungi.Theauthorsofthestudyreportedthat
thedegradationrateswerefoundtobeassociatedbothwith
theactivityofligninolyticenzymesaswellaswiththetypeof
surfactantused.Theauthorsalsoproposedthattheenzymes
thatplayanimportantroleinPAHsdegradation,namely
lac-caseandMnP,arealsoimplicatedinthemetabolismofsome
PAHs.Laccaseisalsoconsideredtobeanimportantenzyme
foroxidizingPAHsinliquidculture.15,16ThefunctionofMnP
inthefluoreneremovalprocessissimilartothatoflaccasein
theearlyweeksofincubationanditsustainstilltheendofthe
incubationperiod.
Itwasobservedthatthemicroorganismsgrewatafaster
ratewhentheliquidculturewassupplementedwithacarbon
sourcesuchasglucose.Glucosewassupplementedintothe
fungalculturetofulfillthefunctionofaco-metabolicsubstrate
inthedegradationprocess.Previousstudieshaveestablished
thatglucoseplaysanimportantroleinthedepolymerization
oflongchainfattyacidsinthebiodegradationprocess.Also,
severalreportsinliteratureclaimthatmanyorganicpollutants
were morequicklytransformed when glucose was
supple-mented into the culture as a co-substrate for growth.22,23
Otherresearchershaveprovedthatformostwhite-rotfungi,
simple carbon sources, such as glucose, provide nutrients
thatarecrucialfortheproductionofextracellularenzymes
andbiomassproduction.Althoughligninolyticenzymesare
producedduringthesecondarymetabolismandarestrongly
influenced by nutrient limitation, the actual pollutant
II
OH O HO HO COOH COOH COOHI
Fig.4–Proposedpathwayoffluorenemetabolismby
Polyporussp.S133.Bracket-compoundswereunidentified
inourcultureextract.
degradation process occurs after the production of
enzymes.24
Fluorenemetabolites
The culture was acidified with HCl in order to stop the
fungal growth following which the sample was extracted
with ethyl acetate.TLC and UV absorbance ofthe sample
extractsrevealedthepresenceofthreefluorinemetabolites
(Table4).GC-MSanalysesoftheethylacetate-extracted
sam-pleswere foundtohavetwomajorchromatographic peaks
(Table4).MetaboliteI(Rf0.35)exhibitedmaxat270nmwhich
corresponds to the 9-fluorenol standard. The spectrum of
CompoundI(tRof8.0min)showmaximam/z254,M+,a
frag-mentionatm/z239(M+−15)representinglossofmethyl,as
wellastheexpectedfragmentionatm/z165(M+−89)which
couldbeaccountedforbythesequentiallossofOSi(CH3)3,and
Table4–UVabsorbanceandmassspectralanalysisofthemetabolicproductproducedfromfluorenebyPolyporussp.
S133.
Metabolites Retentiontime(min) m/zoffragmentions(%
relativeabundance)
Possiblestructure UVabsorbance
I 8.0 73(62),104(6),139(12),152 (19),165(100),178(17),193 (5),221(5),223(6),239(82), 254(92,M+),255(31) 9-Fluorenol-BSTFA (confirmedwitha withastandard) 0 0.2 0.4 0.6 0.8 1 220 260 300 Wavelength (nm) Absorbance II 11.3 73(100),74(12),165(17), 181(14),193(98),194(28), 223(15),311(33),355(54), 370(73,M+),371(29) Protochathecuic acid-TMSderivative (confirmedwitha standard) 0 0.2 0.4 0.6 0.8 1 220 260 300 Wavelength (nm) Absorbance
at73,178,and254.Furthermetabolitecharacterizationwas
donebygrowingPolyporussp.S133ina9-flurenolacid
cul-ture.Intheculture,weidentifiedmetaboliteII(tRof11.3min),
whose spectra was found to have a main ion at m/z 370
(M+),afragmentionatm/z355(M+−15)representinglossof
methylalongwithexpectedfragmentionsatm/z181[M+−89;
OSi(CH3)3], 73[(CH3)3Si], 165and 193.Basedon the mass
spectraldataobtainedabove,weidentifiedcompoundII as
protocatechuicacid.
Polyporussp.S133isawhite-rotfungusthathasthe
capac-itytoeliminateandtransformmanytypesofPAHs.Inthis
study,weestablishedthatthefungussucceededinproducing
theligninolyticenzymeimportantforthedegradationof
flu-orene.Twomajorenzymes,laccaseandMnP,werepresumed
tobevitalforthetransformationofthefluorene.Duringthe
laccase-mediatedoxidationofPAHs,quinoneisformedduring
theinitialstepofdegradationwhile9-fluorenol-1-carboxylic
acid is formed at a later stage. In the next step the
car-boxylicacid compound undergoes a ring cleavage to form
9-fluorenolandprotocatechuicacidwhichisfinallyconverted
totricarboxylicacid.Unfortunately,fluorenequinoneand
9-fluorenol-1-carboxylicacid wasnotidentified inanyofthe
extractsobtainedinthisstudy(Fig.4).Itisknownthatcertain
metabolitesproducedasaby-productofPAHsmetabolismare
hazardousinnature.Forthisreasonfragmentarymetabolism
offluorenehas thepotential topose a gravethreat tothe
ecosystembecausethecharacteristicofintermediate
metabo-litesmay actuallybemoreharmfulthanthatoftheparent
compound.25–28
Conclusions
Fromtheresultspresentedaboveitcanbeconfidently
con-cludedthat fluorene,athree-ringPAH, wasdegradedinits
entirety by a fungusPolyporus sp.S133 followinga 23-day
incubationintheliquidcultureformat.Thepositive
relation-shipbetweenbiomass,enzymeanddegradationestablished
thatthe fluorenebioavailability was significantlyincreased
bysurfactantmediatedbioaccumulationenhancement
espe-ciallythatbyTween80.Nonionicsurfactantswereobserved
toincreasethesorptionrateoffluoreneonthebiomassand
thusimprovetheremovalprocess.Twoimportantligninolytic
enzymes,laccaseand MnP,werefoundtoplayasignificant
role in the complex process of fluorene transformation by
Polyporussp.S133.Toconclude,ourstudymakesapowerful
argumentinsupportoftheutilityandimportanceofTween
80inthePAHs-pollutedsoilbioremediationprocess.
Conflicts
of
interest
Theauthorsdeclarenoconflictsofinterest.
Acknowledgements
A part of this research was financially supported by
a Fundamental Research Grant Scheme (FRGS) of
Min-istryofHighEducationMalaysia(R.J130000.7809.4F465)and
Research University Grant ofUniversiti Teknologi Malaysia
(Q.J130000.2522.10H17).
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