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Phenotypic Impact of Deregulated Expression of Class I Histone Deacetylases in Urothelial Cell Carcinoma of the Bladder
Susana Junqueira-Neto,
1Filipa Q. Vieira,
1, 2Diana Montezuma,
1,3Natália R. Costa,
1Luís Antunes,
4Tiago Baptista,
1Ana Isabel Oliveira,
1Inês Graça,
1,2Ângelo Rodrigues,
3Jos e S. Magalhães,
5Jorge Oliveira,
5Rui Henrique,
1, 3,6and Carmen Jero nimo
1,6*
1
Cancer Epigenetics Group, Research Center of the Portuguese Oncology Institute-Porto, Porto, Portugal
2
School of Allied Health Sciences ESTSP, Polytechnic of Porto, Porto, Portugal
3
Department of Pathology, Portuguese Oncology Institute, Porto, Portugal
4
Department of Epidemiology, Portuguese Oncology Institute, Porto, Portugal
5
Department of Urology, Portuguese Oncology Institute, Porto, Portugal
6
Department of Pathology and Molecular Immunology, Institute of Biomedical Sciences Abel Salazar, University of Porto, Porto, Portugal
Deregulated expression of histone deacetylases (HDACs) has been implicated in tumorigenesis. Herein, we investigated class I HDACs expression in bladder urothelial cell carcinoma (BUCC), its prognostic value and biological signi fi cance.
Signi fi cantly increased transcript levels of all HDACs were found in BUCC compared to 20 normal mucosas, and these were higher in lower grade and stage tumors. Increased HDAC3 levels were associated with improved patient survival. SiRNA experiments showed decrease cell viability and motility, and increased apoptosis. We concluded that class I HDACs play an important role in bladder carcinogenesis through deregulation of proliferation, migration and apoptosis, constituting putative therapeutic targets.
© 2013 Wiley Periodicals, Inc.Key words: bladder cancer; class I HDACs; apoptosis; viability
INTRODUCTION
Bladder cancer is a global health concern, being the 11th most common cancer in both genders, account- ing for 386 300 new cases and 150 200 deaths per year, occurring mostly in the 7th decade of life [1,2]. The adjusted incidence is approximately four times higher in males than in females, although mortality is only about twice in men compared to women [2]. Among bladder tumors, urothelial (transitional cell) carcino- ma (BUCC) is the most frequent histological subtype, comprising 90% of all cases [3]. Commonly, urothe- lial carcinomas are divided in two major groups, the noninvasive or early invasive tumors [confined to the urothelium (CIS, Ta) or to the lamina propria (T1), respectively] also known as “superficial BUCC,”
whereas the remainder are deeply invasive (i.e., infiltrating the muscularis propria and beyond) cancers (T2–T4). The noninvasive tumors are more prevalent, less aggressive, yet with a high rate of recurrence, while invasive tumors are less common, but much more clinically aggressive [4,5]. The histology of infiltrating urothelial carcinomas is variable, although most pT1 tumors are papillary, low or high grade, and most T2–T4 carcinomas are nonpapillary and high grade [6].
BUCC is a very heterogeneous disease and there is substantial evidence for the existence of two distinct molecular pathways in bladder carcinogenesis, in
which distinct genetic alterations are responsible for the formation of noninvasive or invasive urothelial tumors, resulting in divergent biological and clinical phenotypes [7–9]. Noninvasive carcinomas typically arise in the context of hyperplastic urothelium and harbor oncogene mutations, such as in fibroblast growth factor receptor 3 (FGFR3), whereas invasive tumors arise through dysplasia and often display mutations in tumor suppressor genes, such as
Abbreviations: BUCC, bladder urothelial cell carcinoma; HDACs, histone deacetylases; siRNA, small interference RNA; HR, hazard ratios.
Filipa Q. Vieira and Diana Montezuma contributed equally to this work.
Grant sponsor: Research Center of Portuguese Oncology Institute Porto and Fundação para a Ciência e Tecnologia (CI-IPOP-4-2008 and PEST-OE/SAL/UI0776/2011); and European Community's Seventh Framework Programme; Grant number: FP7-HEALTH-F5-2009- 241783; SJ-N was supported by a fellowship from Liga Portuguesa Contra o Cancro
–Núcleo Regional do Norte. NRC, AIO were research fellows from FP7-HEALTH-F5-2009-241783, and IG and FQV were supported by grants from FCT (SFRH/BD/64082/2009 and SFRH/BD/
70564/2010, respectively).
*Correspondence to: Cancer Epigenetics Group, Research Center of the Portuguese Oncology Institute-Porto, Rua Dr. Anto nio Bernardino Almeida, 4200-072 Porto, Portugal.
Received 26 July 2013; Revised 5 November 2013; Accepted 7 November 2013
DOI 10.1002/mc.22117
Published online 30 November 2013 in Wiley Online Library
(wileyonlinelibrary.com).
TP53 [10–12]. At an epigenetic level, these two groups of tumors are also distinct. Invasive tumors depict higher levels of aberrant methylation and upregulation of many miRNAs, whereas, in contrast, noninvasive tumors display low levels of aberrant hypermethylation and downregulation of miRNAs [13,14].
Histone posttranslational modifications play a crucial role in chromatin structure, being acetylation the most extensively characterized [15]. Histones’
acetylation is a dynamic process controlled by the antagonistic actions of acetyltransferases (HATs) and deacetylases (HDACs), which maintain the equilibri- um of acetyl groups added or removed from lysine residues, respectively [16]. HDACs are a family of 18 genes, that act as co-repressors promoting chromatin compaction, which are grouped into four classes depending on amino acid sequence homology in the catalytic domain [17]. Class I HDACs consists on ubiquitously expressed nuclear enzymes, comprising HDAC1, HDAC2, HDAC3, and HDAC8, which are implicated in the regulation of cell differentiation, proliferation, cell-cycle progression, and apopto- sis [18]. Except for HDAC8, they are found as subunits of several multiprotein co-repressor complexes and interact with various transcription factors, being HDAC1 and HDAC2 present in the same complexes (Sin3, NuRD, and CoREST) as homo- or heterodimers [19,20].
Aberrant expression of class I HDACs has been reported in several human cancers, including colo- rectal, gastric, and prostate, and some of these studies have already disclosed their participation in different cell functions frequently deregulated in tumors [21–
23]. Nevertheless, the role of these enzymes in bladder carcinogenesis remains elusive. Hence, we aimed to characterize the expression patterns of each member of class I HDACs in bladder cancer and evaluate their prognostic value, through correlation of molecular findings with standard clinicopathological data.
Moreover, the biological role of altered class I HDACs was investigated using a BUCC cell line as an in vitro model.
MATERIALS AND METHODS Patients and Samples
The 127 BUCC samples selected for this study correspond to a series of patients diagnosed and primarily treated with radical cystectomy or trans- urethral resection, between 1992 and 2011 at Portu- guese Oncology Institute—Porto, Portugal, of which fresh frozen tissue samples were available. For control purposes, 20 morphological normal bladder mucosa (NB) tissues were obtained from patients with prostate cancer submitted to radical prostatectomy. All speci- mens were fresh-frozen at 80 8 C and subsequently cut in a cryostat for nucleic acid and protein extraction. From each specimen, fragments were routinely collected, formalin-fixed, and paraffin-
embedded for routine histopathological examina- tion, including grade and pathological staging, by an expert pathologist. Relevant clinical data was collect- ed from the clinical charts. This study was approved by the institutional review board (Comissa˜o de E´tica para a Sau´de).
Real-Time Quantitative PCR (qRT-PCR)
RNA was extracted from tissues and cell lines using TRIzol
1(Invitrogen, Carlsbad, CA) according to manufacturer’s instructions. First strand synthesis was performed using the high-capacity cDNA Reverse Transcription Kit from Applied Biosystems (Foster City, CA). Expression of target genes was quantified using Taqman probes, acquired as predeveloped assays from Applied Biosystems [HDAC1 (Hs02621185_s1), HDAC2 (Hs00231032_m1), HDAC3 (Hs00187320_m1), and HDAC8 (Hs00218503_m1)] and normalized to the expression of HPRT (Hs01003267_m1), a housekeeping gene.
Western Blot
Whole cell line protein extraction was performed using complete RIPA buffer (Santa Cruz Inc., Santa Cruz, CA) and protein from tissues was extracted using TRIzol
1Reagent (Invitrogen) according to manufacturer’s instructions. Protein extract concen- trations were determined using Qubit
12.0 Fluorom- eter (Applied Biosystems). Subsequently, 30 m g of total protein were loaded in each well, and separated by SDS–PAGE, transferred to nitrocellulose mem- branes and probed with antibodies against HDAC1 (Sigma-Aldrich, Schnelldorf, Germany, 1:1000), HDAC2 (Abcam, Cambridge, UK, 1:6000), HDAC3 (Abcam, 1:6000), HDAC8 (Abcam, 1:1000), p21 (BD Pharmingen
TM, Franklin Lakes, NJ, 1:500) or the endogenous control b -actin (Sigma-Aldrich, 1:8000).
Secondary antibodies, conjugated with horseradish peroxidase, were incubated at a dilution of 1:3000.
Finally, blots were developed using Immun-Star
TMWesternC
TMKit according to manufacturer’s indica- tions (BioRad, Hercules, CA) and exposed to Amer- sham Hyperfilm (GE Healthcare, Fairfield, CT).
Relative optical density determination was performed using QuantityOne
1Software version 4.6.6. (BioRad).
For cell lines, three independent experiments were performed.
Cell Culture
Four urothelial BUCC cell lines [5637, J82, T24,
TCCSUP (ATCC—American Type Culture Collection,
Rockville, MD, USA)] were grown in order to select the
most suitable for in vitro studies. All BUCC cell lines
were cultured in the recommended medium, supple-
mented with 10% fetal bovine serum (FBS) (GIBCO
1,
Invitrogen) and 1% penicillin–streptomycin (P-S)
(GIBCO
1, Invitrogen) at 37 8 C in a humidified
atmosphere containing 5% CO
2, and were tested for
Mycoplasma spp. contamination (PCR Mycoplasma
Detection Set, Clontech Laboratories, Oxford, UK).
After expression analysis for of each class I HDACs, the 5637 cell line was chosen for further studies (data not shown).
Transient Transfection
One day prior to transfection, 5637 cells were seeded under standard conditions in 6-well and 96-well flat- bottomed culture plates in order to reach 30–50%
confluence. Two sets of double-stranded small inter- ference RNA (siRNA) for HDAC1, 2, 3, and 8 and the silencer-negative siRNA as a control were purchased from Eurofins MWG (Ebersberg, Germany), purified and desalted. The sense strands of the HDAC siRNA sequences utilized were as follows: HDAC1, AAGCA- GAUGCAGAGAUUCAAC and CUGUACAUUGACAU UGAUA; HDAC2, AACAGACGUUAAGGAAGAA and GGAUUACAUCAUGCUAAGA; HDAC3, GGCACC- CAAUGAGUUCUAU and GGCUUCACCAAGAGU- CUUA; HDAC8, CAUUCAGGAUGGCAUACAA and GUCCCGAGUAUGUCAGUAU. Cells were transfected with siRNA (100 nM) using Oligofectamine (Invitro- gen), as indicated by the manufacturer. Cells were then collected for further investigation 72 h after transfection. Silencing was validated by qRT-PCR and Western blot.
Viability Assay
Cell viability of 5637 cells following 24-, 48-, and 72-h treatment with class I HDACs siRNAs, performed in 96-well flat-bottomed culture plates at 12 000 cells per well, was evaluated by incorporation of 3-(4,5- dimethylthiazol-2-yl)-2,5-diphenyltetrazolium-bro- mide (MTT) (Sigma-Aldrich). The absorbance was measured using a microplate reader (FLUOstar Ome- ga, BMG Labtech, Offenburg, Germany) at a wave- length of 540 nm with background subtraction at 630 nm. Three replicates were performed for each condition, using triplicates for each experiment.
Apoptosis Assay
Cell apoptosis was quantified using APO Percentage apoptosis assay kit (Biocolor Ltd, Belfast, Northern Ireland) according to the manufacturer’s instructions.
The assay was performed with the same cell con- ditions of the MTT assay, with apoptotic cells measured at the end of 72 h. The absorbance was determined using a microplate reader (FLUOstar Omega, BMG Labtech) at a wavelength of 550 nm with background subtraction at 620 nm. Three inde- pendent experiments were performed, using six replicates for each experiment.
Wound Healing Assay
Cell migration of 5637 cells was examined using a monolayer wounding method, after 48 h of trans- fection, performed in six-well flat-bottomed cul- ture plates initially seeded with 500 000 cells per well. The monolayer was wounded by scraping a
line across the well with a sterile pipette tip. Cells were washed with PBS and refreshed with RPMI supplemented with 10% fetal bovine serum. After 0, 9, and 24 h, the cultured cells were observed under a phase-contrast microscope (Olympus IX51, Olympus, UK) and photographed at marked spots. Three replicates were performed for each condition.
Statistical Analysis
Differences in quantitative expression levels be- tween BUCC and NB were assessed using the nonparametric Mann–Whitney (M-W) U-test. The relationship between expression ratios and other standard clinicopathological variables (gender, tumor stage, and grade) were determined using the M-W or Kruskall–Wallis (K-W) tests, as appropriate. A Spear- man nonparametric correlation test was additionally performed to compare age and expression levels. The results of all functional in vitro assays (scramble vs.
silenced cells) were analyzed using one-way analysis of variance (ANOVA), complemented with a post hoc Dunnet’s test for multiple comparisons, when appropriate.
To test the prognostic significance of the expression status of each class I HDAC, samples were categorized into two groups based on the respective expression levels (using the median as the cutoff value). Disease- specific (DSS) and disease-free survival (DFS) curves were then constructed for each HDAC using the Kaplan–Meier method and groups survival were compared using log-rank test. Since follow-up time was very heterogeneous, analysis was limited to the first 5 yr, censoring all times that exceeded that period. Hazard ratios (HR) were estimated using univariate Cox regression. A Cox-regression model comprising all clinicopathological variables and molecular variables which reached statistical signifi- cance in univariate analysis (multivariate test) was also constructed.
All analyses were performed with SPSS software (SPSS Version 20.0, Chicago, IL) and statistical significance was set at P < 0.05.
RESULTS Clinical and Pathological Characteristics
Relevant clinical and pathological data were collected from patient’s clinical charts (Table 1).
All patients and controls were Caucasian. Among
127 tissue samples of bladder carcinoma tested, 100
were from male patients and the remainder from
female patients. All normal mucosas (n ¼ 20) were
collected from males. The majority of cases
(n ¼ 103) corresponded to primary tumors and
only 24 were tumor recurrences. The median age
of the individuals with BUCC was significantly
higher than those of controls (Mann–Whitney,
P ¼ 0.001).
Expression Patterns of Class I HDACs in Bladder Tissue and Correlation With the Clinicopathological Parameters
A statistically significant overexpression of all class I HDACs was observed in bladder tumors compared to normal mucosas (Mann–Whitney, P < 0.0001 for all, Figure 1A). Protein expression was determined in three randomly selected tumor samples and all displayed higher levels of class I HDACs compared to normal bladder mucosas (Figure 1B), corroborating the results obtained for HDACs transcript levels.
Concerning pathological stage and grade, statisti- cally significant differences were observed only for HDAC1 and HDAC3 (P < 0.001, K-W). Pairwise com- parisons (NB vs. BUCC; superficial BUCC vs. deeply invasive, and NB vs. low-grade papillary, high-grade papillary or invasive; low-grade papillary vs. high-
grade papillary or invasive; high-grade papillary vs.
invasive) were also statistically significant (M-W).
HDAC1 and HDAC3 were downregulated in deeply invasive and advanced tumors (T2–T4 stages), in comparison to noninvasive and less advanced carci- nomas, respectively. Nonetheless, no significant differences were apparent between low-grade papil- lary and high-grade papillary tumors (Figure 2).
Regarding HDAC2 and HDAC8, no differences in transcript levels were found among the different pathological grades and stages. Moreover, no signifi- cant association was found between class I HDAC transcript levels and gender (M-W, P > 0.05) or age (Spearman’s correlation, P > 0.05).
Class I HDACs Expression and Patient Survival
Patients with higher levels of HDAC3 had a significantly better disease-specific survival (HR
¼ 0.40; 95% CI: 0.17–0.96;
P ¼ 0.035), but not DFS, compared to patients with lower transcript levels (Figure 3A). As expected, lower grade and lower pathological stage were also associated with improved DSS (HR ¼ 8.95; 95% CI: 3.81–21.01; P < 0.001 and HR ¼ 8.12; 95% CI: 3.54–18.63; P < 0.001, respective- ly) (Figure 3B and C). Conversely, HDAC1, HDAC2, and HDAC8 did not disclose any prognostic value (either in DSS or DFS) in our dataset. In multivariate analysis, however, no statistically significance was found for any of the molecular variables (P > 0.05, for all), although tumor stage disclosed independent prognostic value for DSS (P ¼ 0.022), but only in papillary tumors.
Impact of Class I HDACs Silencing on 5637 Cell Line Phenotype
Quantitative RT-PCR for HDAC1, HDAC2, HDAC3, and HDAC8 was performed in several BUCC cell lines (TCCSUP, 5637, T24, and J82). Among all the cell lines Table 1. Clinical and Histopathological Features of Patients
With Bladder Urothelial Cell Carcinoma (BUCC) and Normal Bladder Mucosa (NB) Donors
Clinicopathological features BUCC NB Median age, yrs (range)
72
(35 – 92)
61 (51 – 75) Gender, n (%)
Male 100 (79) 20 (100)
Female 27 (21) 0 (0)
Histopathological grade, n (%)
Papillary carcinoma, low grade 48 (38) n.a.
Papillary carcinoma, high grade 47 (37) n.a.
Invasive carcinoma 28 (22) n.a.
Pathological stage, n (%)
Ta 40 (31) n.a.
T1 53 (42) n.a
T2 23 (18) n.a
T3 3 (2) n.a
T4 4 (3) n.a
n.a., not applicable.