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2019/2020

Raquel Sofia da Silva Moreira

Hospitalizations for Varicella in children and adolescentes in Portugal:

2000 to 2015

Hospitalizações por Varicela em crianças e adolescentes em Portugal:

2000 a 2015

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Mestrado Integrado em Medicina

Área: Pediatria

Tipologia: Dissertação

Trabalho efetuado sob a Orientação de:

Doutora Maria Inês Ferreira Águeda Azevedo

Trabalho organizado de acordo com as normas da revista:

International Journal of Infectious Diseases

Raquel Sofia da Silva Moreira

Hospitalizations for Varicella in children and adolesents in Portugal:

2000 to 2015

Hospitalizações por Varicela em crianças e adolescentes em Portugal:

2000 a 2015

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“Matar o sonho é matarmo-nos. É mutilar a nossa alma. O sonho é

o que temos de realmente nosso, de impenetravelmente e

inexpugnavelmente nosso.”

Fernando Pessoa

À minha irmã, o maior amor da minha vida

Aos meus pais, pelo suporte incondicional

Aos meus amigos, que foram muitas vezes família

A todos os intervenientes neste projeto, em especial, à professora Inês,

por toda a ajuda e disponibilidade que sempre demonstraram

Um obrigada sincero a todos, por terem contribuído para que este sonho

esteja cada vez mais perto.

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1

§Hospitalizations with Varicella in children and adolescents in

Portugal: 2000 to 2015

Raquel Sofia Moreira

1

, José Fontoura Matias

2

, Ana Reis Melo

2,3

, Alberto Freitas

4,5

, Inês

Azevedo

2,6,7

1

Faculty of Medicine, Universidade do Porto, Porto, Portugal

2

Department of Pediatrics, Centro Hospitalar São João, Porto, Portugal

3

Department of Biomedicine, Faculty of Medicine, Universidade do Porto, Porto,

Portugal

4

Department of Community Medicine, Information and Health Decision Sciences-

MEDCIDS, Faculty of Medicine, Universidade do Porto, Porto, Portugal

5

Center for Health Technology and Services Research (CINTESIS), Faculty of Medicine,

Universidade do Porto, Porto, Portugal

6

EpiUnit, Institute of Public Health, Universidade do Porto, Porto, Portugal

7

Department of Obstetrics, Gynecology and Pediatrics, Faculty of Medicine,

Universidade do Porto, Porto, Portugal

Correspondence: Inês Azevedo, Departamento de Ginecologia-Obstetrícia e Pediatria,

Faculdade de Medicina, Universidade do Porto, Alameda Professor Doutor Hernâni

Monteiro, Porto, 4200-319, Portugal. E-mail: iazevedo@med.up.pt

Declarations of interest: None

Funding: This research did not receive any specific grant from funding agencies in the

public, commercial, or not-for-profit sectors

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2

Abstract

Objectives: Varicella is a common usually benign and auto-limited disease in children,

but can lead to severe complications and hospitalization. With this study, we aim to

analyze all varicella hospitalizations in order to provide epidemiological information to

help outlining preventive policies.

Design/Methods: We assessed all varicella hospitalizations in children from 0 to 17 years

of age, from 2000 to 2015, in mainland public Portuguese hospitals, using a Portuguese

administrative database. Seasonality, geographic distribution, severity, complications,

risk factors and use of diagnostic and treatment procedures were analyzed by age groups.

Results: A total of 5,120 hospitalizations were registered, with an annual rate of 17.2

hospitalizations/100,000 inhabitants. Higher number of hospitalizations occurred during

the summer period and in Southern regions. The median length of stay was of four days.

We found a high rate of severe, mostly dermatological, neurological and respiratory

complications. Of the total of patients, 0.8% were immunocompromised and 0.1% were

pregnant. Total direct hospitalization costs during the 16-year period were estimated to

be 7,110,718.70€.

Discussion: This study provides useful epidemiological data to evaluate the relevance of

including the Varicella Zoster Vaccine in our National Vaccination Program.

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3

Introduction

Varicella is a common exanthematic disease, caused by Varicella Zoster Virus

(VZV) that represents a significant health burden. [1] In the absence of vaccination,

around 90% of varicella cases occur before 13 years of age, particularly in pre-school

children. [1] Despite being usually a benign and self-limited disease, varicella can lead to

severe complications requiring hospitalization.[2][3]

The main complications associated with varicella are skin and soft tissue

infections, including cellulitis and necrotizing fasciitis,[4] pneumonia, neurological

complications such as meningitis, encephalitis and ataxia, and sepsis.[5] The vaccine was

created as a strategy to prevent the infection by VZV, and its complications.[6][2]

Vaccination policies vary among countries, depending on local resources to reach and

sustain a vaccine coverage level of ≥80%, as recommended by the World Health

Organization. [7] In Portugal, the two life attenuated vaccines are available for

prescription since 2003 but are not yet included in the routine National Vaccination

Program, as thus only a small proportion of the children are vaccinated.

Up to our best knowledge, there is only one study analyzing the incidence of

hospitalizations for varicella in Portugal, using limited data from one hospital.[8] The

purpose of our study is to evaluate the hospitalizations related to varicella in children and

adolescents, in all the public Portuguese mainland hospitals, between 2000-2015, and

assess the main complications, severity and direct costs, in order to help to analyze the

potential benefit of the introduction of the varicella vaccine in the National Vaccination

Program.

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Methods

Study Design

We conducted a retrospective observational study, including all patients who were

hospitalized from 2000 to 2015 with varicella, using the code 052.X from the

International Classification of Diseases, Ninth Revision, Clinical Modification

(ICD-9-CM). We used an administrative database from mainland public hospitals, supplied by

ACSS - Central Administration of the Health System, an agency that belongs to the

Portuguese National Health System and collects administrative and clinical information,

as diagnoses and procedures, through ICD-9-CM codification, related to all

hospitalizations. We considered only inpatient episodes, with a length of stay (LOS) of

one day (24 hours) or more, and a diagnosis of varicella at any stage.

Population data from 2000 to 2015 was considered as available on the National

Statistics Institute (Statistics Portugal - INE) website. [9]

Outcome Measures

The main outcomes were the number of hospitalizations with varicella and the rate

of admissions per age group. As secondary outcomes, we assessed the seasonality and

geographic distribution, severity, risk factors, use of diagnostic tests, required treatment

and direct costs.

Seasonality was assessed by month of hospitalization, and geographic area was

evaluated using the level II of the NUTS classification (Nomenclature of Territorial Units

for Statistics). [10]

Severity was evaluated by LOS, in-hospital mortality rate, use of invasive

(ICD-9-CM 96.70, 96.71, 96.72) or non-invasive ventilation (93.90) or of oxygen supply

(93.96) and by the main complications associated to varicella. These later were assessed

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using ICD-9-CM codification (available at Table, Supplementary online material 1). The

risk factors considered were immunodeficiency (042, 279.X) and pregnancy (V22,

V23.83, 647.6). The diagnostic procedures analyzed were: chest x-ray (87.44, 87.49);

head CT scan (87.03); brain MRI (88.91); microscopic examination of the blood (90.5X).

As required treatments, we evaluated the use of intravenous antibiotics (00.14, 99.21,

99.22, E930.9, 960.X), intravenous fluid therapy (99.18), oxygen supply and mechanical

ventilation.

Direct costs were estimated using a budget allocation model based on

diagnosis-related groups (DRG), through the use of hospital reimbursement tables, provided by the

Portuguese Health Service and established by the Portuguese government. [11]

Data analysis and Statistical Analysis

The population was analyzed according to gender and age. Considering age, the

patients were divided into six groups: 0-28 days, 28 days-5 months, 6-11 months, 1-4

years, 5-9 years, and 10-17 years.

Descriptive analyses were carried out using using IBM SPSS Statistics 24 for Windows

and Microsoft EXCEL 2018. Frequencies and percentages were calculated taking in

account each age group. Continuous variables are presented as mean (SD) or median

(IQR, [P25; P75]), as apropriate. To calculate the rates, we used as denominator the

Population data provided by National Institute of Statistics

.

Ethics

The dataset was previously anonymized and its use authorized by ACSS through a

protocol with CINTESIS/FMUP (Center for Health Technology and Services Research /

Faculty of Medicine of the University of Porto, Portugal).

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Results

During this 16-year period, a total of 5,120 hospitalizations with varicella in

children, in mainland Portuguese public hospitals, were registered (Table 1), 3,645 of

them with Varicella as first stage of diagnose. The average number of hospitalizations

was 320 per year, providing an annual rate of hospitalization of 17.2/100,000 inhabitants.

Children between one and four years of age accounted for 58% of the total admissions;

4% occurred in newborns, 9% between 28 days and 5 months of age, 8% between 6 and

11 months of age, 16% between 5 and 9 years of age and 6% between 10 and 17 years of

age. There were two cases of congenital varicella registered. The age group between birth

and 28 days of age registered the higher admission rate, 148.2/100,000 inhabitants. (Table

1).

Males accounted for 54.7% of cases. There were four peaks of hospitalizations, in

2004, 2007, 2011 and 2014 (figure 1). The highest number of admissions occurred in

2007, with 475 admissions. The annual distribution by month showed a higher number of

cases between April and August, mostly during the warmer months (June, N=790 and

July, N=804) (figure 2). The rate of hospitalizations was higher in southern areas as

Alentejo (26.4) Lisbon (21.2) and Algarve (17.2), than in Center (16.7) and North (14.5)

regions.

The median LOS was 4 days [IQR 3-7]. The highest LOS was observed for

children between 0 and 28 days of age, with a median LOS of 7 days. The need for

mechanical ventilation was reported in 53 children, in 79% of them invasive ventilation.

Forty-nine children (0.9%) had the presence of a risk factor, immunodeficiency in 39, and

pregnancy in six.

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The most requested diagnostic procedure was microscopic examination of the

blood (74.2%). Chest x-ray, head CT scan and brain MRI were requested in 26.3%, 4.9%

and 2.0%, respectively.

Intravenous antibiotics were prescribed in 61.8% of the patients and intravenous

fluid therapy in 47.4%. The main complications related to varicella are shown on Table

2. The most frequent were skin infections, as impetigo (10.7%), cellulitis (6.3%) and

necrotizing fasciitis (0.5 %), followed by respiratory and neurological disorders, mainly

pneumonia (4.4%) and encephalitis (3.6%).

There were eight deaths during this period (corresponding to 0.15% of the

admissions), three in children with acute lymphocytic leukemia, one with pneumococcal

septicemia, one with streptococcal septicemia, one with E. coli infection, one with

postinfectious intestinal adhesions with obstruction and one with complicated varicella

as a first diagnose.

The mean and median estimated costs directly related to the hospitalizations were

1,388.80€ and 560.0 € [560.0–1,355.8], respectively. Over the 16 years, the total costs

were estimated to be 7,110,718.70 €.

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Discussion

This is the first study in Portugal accessing hospitalizations with varicella in

children and adolescents, in all mainland public Hospitals, and, therefore, important to

analyze the impact that varicella has in our country

.

During these sixteen years of study,

we registered a total of 5,120 hospitalizations, 3,645 which were admitted with a primary

diagnosis of varicella. These are the cases that most reliably portray hospitalizations for

complications directly related to varicella infection.

The rate of admissions longer than 24 hours was 17.3/100,000 inhabitants, which

is higher than reported in Denmark, England and Norway (11, 7.6 and 7.3,

respectively)[12][13][14] but lower when compared with data from Belgium and Spain

(29.5 and 23.6)[15][16]

The age group in which the rate of hospitalizations was higher was in newborns,

and progressively decreased as age advanced. This can be explained by the fact that

newborns have a significant risk of life-threatening complications in case of perinatal

infection and require greater attention and intravenous treatment.[17] As in Portugal

varicella is not a mandatory notifiable disease, we are unable to access the exact number

of cases for each age group, but it is predictable that the highest incidence rate of cases

occur in children between one and four years of age, as it is the age group in which most

children have their first contact with other children, in daycare centers and school, and

therefore in which there is greater risk of contagion, as it happens in other

countries.[13][16][18][19] This was shown in other countries in which varicella is a

mandatory notifiable disease.[20][21]

In this 16-year study, the number of admitted cases has varied unevenly. After the

introduction of the vaccine in the market, in 2003, the number of hospitalizations did not

show a decreasing pattern, with the highest peak of hospitalizations being recorded in

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2007. This is probably due to a low varicella vaccine coverage in children, as according

to WHO recommendations, and national recommendations from the Pediatric Portuguese

Society, the vaccine is not recommended for healthy young children outside a National

Vaccination Schedule that can assure a high vaccine coverage. [7]

Most hospitalizations occurred between April and August, with a peak in June and July,

which is in agreement with data from Spain, which has weather conditions similar to our

country. [15]

Studies from Turkey, Poland and Sweden showed different results, with

most admissions occurring between December and March. [18][20][21]

Regarding geographic distribution, the region with the highest rate of admissions

was Alentejo, followed by Lisbon, Algarve, Center and North. The southern regions of

Portugal are the most sought areas during the summer months, when hospitalizations were

higher, which might explain why the highest proportion of cases has occurred in these

areas, but another plausible explanation could relate to a higher solar radiation in the

southern areas of Portugal, as Hervas et al suggested that solar radiation could be

important in the dynamics of varicella in Mallorca, Spain.[22]

The median LOS was four days (IQR 3 – 7), which is also consistent with data

from other studies.[12][15][19][23] It was similar for all age groups, with the interquartile

range being slightly higher at the extremes of age (0-28 days and 10-17 years). In the case

of newborns, it can be explained once again by the fact that newborns do not yet have a

well-developed immune system and so required increased vigilance from the healthcare

workers. On the other hand, complications tend to be more severe when the infection

occurs in adolescents, as it happens in adults which may justify the need for a longer

hospital stay. [7][24]

Complications were reported in 49.8% of cases, and as expected the most common

were dermatological, mainly impetigo, cellulitis and abscesses, but it important to notice

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that necrotizing fasceiitis occurred in 0.5% of cases. Severe neurological complications

occurred in 4.4% of cases, noteworthily encephalitis, that was more commonly reported

in children older than 4 years. Respiratory complications, mainly pneumonia, were

reported in 5.1% of children and life-threatening complications such as sepsis or acute

respiratory distress syndrome were reported in around 2% of the cases. This is consistent

with other studies, in which dermatological, neurological and respiratory complications

are the three most commonly complications associated with varicella, although the

incidence for each one varies from country to country.[4][12][15][16][18][19] This can

be explained by the susceptibility of individuals for specific diseases, and other yet not

totally understood differences such as climatic factors and population density.

We were not able to directly assess the number of ICU admissions and, therefore,

we used the need for mechanical ventilation, either invasive or non-invasive, to estimate

these admissions. Around 1% of hospitalized children required mechanical ventilation,

0.8% of them non-invasive ventilation.[25]

A total of eight deaths (0.2%) were registered

during this period, consistent with the percentage found in other European

countries.[12][14][16][18] This number shows that despite being commonly a benign

disease, varicella can lead to some serious and fatal complications, especially when it

occurs in at risk patients, as happened in our cases. There were 0.8% of cases associated

with immunosuppression and 0.1% (six cases) in pregnancy. The proportion o f

hospitalized immunocompromised individuals was lower than found in other

studies.[12][16][19] These cases were identified selecting the ICD-9-CM codes related to

immunosuppression only (ICD-9-CM 0.42 and 279.X), which may explain the

differences found. There are many other conditions that may not be codified and that can

lead to immunocompromised states, that were not accounted for. This leads to an

underestimation of the percentage of hospitalized immunocompromised children. The

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importance of pregnancy as a risk factor is not only related to the consequences that it can

bring to the mother, but was considered specially to assess the risk of congenital varicella,

which can lead to very severe and fatal complications for the baby.

The mean direct cost related to the hospitalizations was around 1,388.80€, which

is less than compared with Spain and England, where the costs are around 3,933.80€ and

2,037.64 € per patient, respectively. [13][26][27] It would be interesting to make a more

realistic approximation of costs in a future study, as it was made in Hungary.[23] It is

important to bear in mind that the full financial burden related to varicella hospitalizations

is grossly underestimated, as they take only in account the values established by the

Ministry of Health for reimbursement, according to the diagnosed-related group in

question and other costs related to parents’ days missed from work and the follow-up of

patients nor the burden of sequalae were not considered.

Our findings showed that varicella is responsible for a considerable number of

hospitalizations in our country. However, there are some limitations in our study that must

be considered. Firstly, as referred, varicella is not a mandatory notifiable disease, which

means that we cannot estimate a real rate between hospitalizations and children infected

with varicella, as done in other countries. [28][29][30] Also, it is important to be aware

that in a percentage of cases, that we cannot calculate accurately, the hospital admission

may have occurred for another reason, regardless the concomitant diagnosis of varicella,

which may end up overestimating the results. We used the ICD-9-CM codification to

identify varicella cases, yet, it is possible that the codification is not as accurate as we

intended, and it can lead to an underestimation of the incidence of hospitalizations. In

addition, the clinical record itself may not be done in the most correct way by health

professionals, leading to codification failures and, consequently, lack of information.

Even when it comes to complications, they may be underestimated, considering, in many

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cases, that only a single code is attributed as diagnosis to a patient. On the other hand, it

can happen that only the complication associated with varicella is coded, without coding

varicella itself.

Regarding the calculation of rates, we used data from the National

Institute of Statistics. However, for the first year of life, there is no breakdown of the

population for each month of life and, as such, in the case of age groups between 0-28

days, 28 days- 5 months and 6-11 months, the population was estimated assuming a

similar distribution over the months of age, which makes the rates calculated for these

age groups an approximation of reality.

In Portugal, even though the vaccine is available since 2003, it is not part of the

National Vaccination Program. We could not access the real number of vaccinated

children, and for that reason we have not been able to reliably compare the pattern of

hospitalizations between vaccinated and unvaccinated children, as has already been done

in other countries. [31][32][33][34][35][36][37][38]

With this study, we believe we have provided important epidemiological

information on varicella admissions in mainland Portuguese hospitals, which could be

useful for considering varicella universal vaccination in the future.

Acknowledgements

The authors would like to thank the Portuguese Ministry of Health for providing

access to the hospitalization data managed by the Portuguese Central Health System

Administration (Administração Central do Sistema de Saúde).

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13

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https://doi.org/10.1016/J.VACCINE.2017.11.057.

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2004;144:68–74.

[35] Requirements E. T HE E F F EC T IVE NE SS OF TH E VA RICELL A VACC

INE IN C LINICA L PRAC TIC E THE EFFECTIVENESS OF THE

VARICELLA VACCINE IN CLINICAL PRACTICE 2001;344:955–60.

[36] Pozza F, Piovesan C, Russo F, Bella A, Pezzotti P, Emberti Gialloreti L. Impact of

universal vaccination on the epidemiology of varicella in Veneto, Italy. Vaccine

2011;29:9480–7. https://doi.org/10.1016/j.vaccine.2011.10.022.

[37] Neyro SE, D M, Ferolla FM, D M, Molise C, D M. Impacto clínico y

epidemiológico de las infecciones por varicela en niños previo a la introducción de

la vacuna al Calendario Nacional de Argentina. Arch Argent Pediatr 2019;117:12–

8. https://doi.org/10.5546/aap.2019.12.

[38] Hagemann C, Krämer A, Grote V, Liese JG, Streng A. Specific Varicella-Related

Complications and Their Decrease in Hospitalized Children after the Introduction

of General Varicella Vaccination: Results from a Multicenter Pediatric Hospital

Surveillance Study in Bavaria (Germany). Infect Dis Ther 2019;8:597–611.

https://doi.org/10.1007/s40121-019-00273-6.

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0- 28 days 28 days - 5 months 6- 11 months 1- 4 years 5- 9 years 10-17 years Total

Total Hospitalizations, N (%) 189 (4) 443 (9) 411 (8) 2,948 (58) 824 (16) 305 (6) 5,120

Hospitalization Rate (per 100,000) 148.2 69.5 53.7 46.8 10.2 2.24 17.3 Severity

LOS, median [IQR] 7 [5-9] 5 [3-7] 4 [3-6] 4 [2-6] 4 [2-7] 5 [3-8] 4 [3-7]

Mortality , N (%) 0 1 (0.22) 0 4 (0.14) 2 (0.14) 1 (0.33) 8 (0.15)

Mechanical Ventilation, N(%) 8 (4.2) 4 (0.9) 7 (1.7) 20 (0.7) 9 (1.1) 5 (1.6) 53 (1.0)

Invasive Ventilation , N (%) 3 (1.6) 0 1 (0.2) 4 (0.1) 1 (0.1) 2 (0.6) 11 (0.2)

Non- Invasive Ventilation , N (%) 5 (2.6) 4 (0.9) 6 (1.5) 16 (0.5) 8 (1.0) 3 (1.0) 42 (0.8)

Risk Groups Immunodeficiency, N (%) 1 (0.5) 2 (0.5) 1 (0.2) 17 (0.6) 12 (1.5) 6 (2.0) 39 (0.8) Pregnancy, N (%) 0 0 0 0 0 6 (2.0) 6 (0.1) DiagnosticProcedures ChestX-ray, N (%) 16 (8.5) 109 (24.6) 145 (34.5) 831 (28.2) 169 (20.5) 77 (25.2) 1,347 (26.3) Head CT scan, N(%) 1 (0.5) 6 (1.4) 9 (2.2) 126 (4.3) 78 (9.5) 30 (9.8) 250 (4.9) Brain MRI, N(%) 1 (0.5) 4 (0.5) 4 (1.0) 51 (1.7) 29 (3.5) 12 (3.9) 101 (2.0)

Microscopic examination of the blood, N

(%) 125 (66.1) 305 (68.8) 309 (75.2) 2,258 (76.6) 600 (72.8) 202 (66.2) 3,799 (74.2)

Required treatment

Intravenous antibiotics, N (%) 92 (48.7) 210 (47.4) 262 (63.7) 1,962 (66.6) 475 (57.6) 163 (53.4) 3,164 (61.8) Fluid therapy, N (%) 46 (24.3) 171 (38.6) 210 (51.1) 1,441 (48.9) 416 (50.5) 141 (46.2) 2,425 (47.4) Oxygen supply, N (%) 5 (2.6) 23 (5.2) 34 (8.3) 130 (4.4) 20 (2.4) 6 (2.0) 218 (4.3)

Table 1 - Characteristics of hospitalizations due to varicella in pediatric patients from 2000 to 2015, in mainland Portugal, by age groups

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20 Figure 1 - Annual variation of Varicella-related hospitalizations, from 2000 to 2015, for each age group

2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 0 50 100 150 200 250 300 Year N um b er o f H o spi ta li z a ti o n s

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21 Figure 2: Monthly variation of Varicella-related hospitalizations, from 2000 to 2015, for each age group

Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec

0 100 200 300 400 500 600 700 800 900 Month Cum ul a ti v e n um b er o f h o spi ta li z at io n s

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0- 28 days 28 days - 5 months 6- 11 months 1- 4 years 5- 9 years 10-17 years Total

Skin Complications, N (%) 7 (3.7) 44 (9.9) 95 (23.1) 690 (23.4) 130 (15.8) 34 (11.1) 1000 (19.6) Abcess 0 2 (0.5) 10 (2.4) 76 (2.6) 11 (1.3) 4 (1.3) 103 (2.0) Cellulitis 0 14 (3.2) 29 (7.1) 228 (7.7) 39 (4.7) 12 (3.9) 322 (6.3) Necrotizing fasceiitis 0 0 2 (0.5) 18 (0.6) 7 (0.8) 0 27 (0.5) Impetigo 7 (3.7) 28 (6.3) 54 (13.1) 368 (1.2) 73 (8.9) 18 (5.9) 548 (10.7) Neurological Complications, N (%) 0 (0) 3 (0.7) 10 (2.4) 173 (5.9) 91 (11.0) 28 (9.2) 305 (6.0) Myelitis 0 0 0 1 (0.0) 5 (0.6) 0 6 (0.1) Encephalitis 0 2 (0.5) 2 (0.5) 93 (3.2) 69 (8.4) 19 (6.2) 185 (3.6) Meningitis 0 0 0 1 (0.0) 1 (0.1) 1 (0.3) 3 (0.1) Cerebellar Ataxia 0 0 0 11 (0.4) 7 (0.8) 4 (1.3) 22 (0.4) Febrile seizures 0 1 (0.2) 8 (1.9) 67 (2.3) 9 (1.1) 4 (1.3) 89 (1.7) Respiratory Complications, N (%) 3 (1.6) 13 (2.9) 27 (6.6) 168 (5.7) 40 (4.9) 10 (3.3) 261 (5.1) Acute tonsillitis 0 1 (0.2) 1 (0.2) 26 (0.9) 8 (1.0) 1 (0.3) 37 (0.7) Pneumonia 3 (1.6) 12 (2.7) 26 (6.3) 142 (4.8) 32 (3.9) 9 (3.0) 224 (4.4) Osteomuscular Complications, N(%) 0 (0) 0 (0) 9 (2.2) 47 (1.6) 16 (1.9) 2 (0.7) 68 (1.3) Mastoiditis 0 0 1 (0.2) 9 (0.3) 2 (0.2) 1 (0.3) 13 (0.3) Assseptic Arthritis 0 0 7 (1.7) 31 (1.1) 12 (1.5) 0 50 (1.0) Osteomyelitis 0 0 1 (0.2) 7 (0.2) 2 (0.2) 1 (0.3) 11 (0.2) Gastrointestinal Complications, N(%) 0 (0) 6 (1.4) 10 (2.4) 42 (1.4) 8 (1.0) 2 (0.7) 68 (1.3) Gastroenteritis 0 6 (1.4) 10 (2.4) 42 (1.4) 8 (1.0) 2 (0.7) 68 (1.3) Hematological Complications, N(%) 2 (1.1) 10 (2.3) 3 (0.7) 40 (1.4) 10 (1.2) 10 (3.3) 75 (1.5) Thrombocytopenia 0 0 0 4 (0.1) 1 (0.1) 1 (0.3) 6 (0.1) Neutropenia 2 (1.1) 10 (2.3) 3 (0.7) 36 (1.2) 9 (1.1) 9 (3.0) 69 (1.3) Infectious, other N(%) 6 (3.2) 13 (2.9) 19 (4.6) 73 (2.5) 21 (2.5) 2 (0.7) 134 (2.6) Sepsis 5 (2.6) 7 (1.6) 13 (3.2) 34 (1.2) 12 (1.5) 1 (0.3) 72 (1.4) ARDS 0 2 (0.5) 1 (0.2) 12 (0.4) 3 (0.4) 1 (0.3) 19 (0.4) Hyponatremia 1 (0.5) 4 (0.9) 5 (1.2) 27 (0.9) 6 (0.7) 0 43 (0.8) Congenital Varicella, N(%) 2 (1.1) 0 0 0 0 0 2 (0.04)

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AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 1

INTERNATIONAL JOURNAL OF INFECTIOUS

DISEASES

Official Publication of the International Society for Infectious Diseases

AUTHOR INFORMATION PACK

TABLE OF CONTENTS

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• Description

• Impact Factor

• Abstracting and Indexing

• Editorial Board

• Guide for Authors

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ISSN: 1201-9712

DESCRIPTION

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The International Journal of Infectious Diseases (IJID) is published monthly by the International Society for Infectious Diseases. IJID is a peer-reviewed, open access journal and publishes original clinical and laboratory-based research, together with reports of clinical trials, reviews, and some case reports dealing with the epidemiology, clinical diagnosis, treatment, and control of infectious diseases with particular emphasis placed on those diseases that are most common in under-resourced countries.

IMPACT FACTOR

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2018: 3.538 © Clarivate Analytics Journal Citation Reports 2019

ABSTRACTING AND INDEXING

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Directory of Open Access Journals (DOAJ)

EDITORIAL BOARD

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Editor-in-Chief

Eskild Petersen, Aarhus University Hospital Institute of Clinical Medicine Department of Infectious Diseases, Skejbygaardsvej 100, 8200, Aarhus, Denmark

Editors

Lucille Blumberg, National Institute for Communicable Diseases, South Africa

Shui Shan Lee, Chinese University of Hong Kong Stanley Ho Centre for Emerging Infectious Diseases, /F Postgraduate Educ Centre,Prince of Wales Hospit, Hong Kong, Hong Kong

Ira Praharaj, Christian Medical College Vellore, 632004, Vellore, India

Sean Wasserman, University of Cape Town Institute of Infectious Disease and Molecular Medicine, Observatory 7925, Cape Town, South Africa

Editorial Office

Isabela Caus

Editorial Advisory Board

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AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 2 Ashish Bhalla, Chandigarh, India

Bin Cao, Beijing, China

Ron Dagan, Be'er Sheva, Israel

David Fisman, Toronto, Ontario, Canada Rodrigo Guabiraba, Nouzilly, France Hajjeh, Egypt

Mark Holodniy, Stanford, California, United States Yao Kaihu, Beijing, China

Keith Klugman, Atlanta, Georgia, United States Hakan Leblebicioglu, Samsun, Turkey

Marc Mendelson, Cape Town, South Africa Xavier Sáez-Llorens, Panama City, Panama

Program Coordinator

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AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 3

GUIDE FOR AUTHORS

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Your Paper Your Way

We now differentiate between the requirements for new and revised submissions. You may choose to submit your manuscript as a single Word or PDF file to be used in the refereeing process. Only when your paper is at the revision stage, will you be requested to put your paper in to a 'correct format' for acceptance and provide the items required for the publication of your article.

To find out more, please visit the Preparation section below.

The International Journal of Infectious Diseases(IJID) is published monthly by the International Society for Infectious Diseases.

IJID is a peer-reviewed, open access journal and publishes position papers, original clinical and

laboratory-based research, together with reports of clinical trials, reviews, exceptional case reports. The interest areas of the IJID are epidemiology, clinical diagnosis, treatment, and control of infectious diseases with particular emphasis placed on under-resourced countries. The IJID does not publish veterinary studies and studies based on animal models alone.

Manuscript types

Original articles on infectious disease topics of broad interest. We particularly welcome papers that

discuss epidemiological aspects of international health, clinical reports, clinical trials and reports of laboratory investigations. Original articles should not exceed 3500 words in length.The word count is from the introduction through to the end of the conclusion/discussion and does not include abstract, tables, figures, acknowledgements or reference list.

Reviews on topics of importance to readers in diverse geographic areas. These should be

comprehensive and fully referenced.

Article requirements: Word count for the main part of the manuscript from introduction to conclusion/ discussion: 2,500 to max of 4000 words. One or two figures/tables, a brief abstract, an introduction, a conclusion, and no more than 30 references.

Perspectives are papers that advance a hypothesis or represent an opinion relating to a topic of

current interest or importance. They should be fully referenced, and should not exceed 2000 words in length.

Correspondence relating to papers recently published in the Journal, or containing brief reports of

unusual or preliminary findings. Maximum length 400 words, one table or figure and a maximum of 10 references.

Case Reports must be carefully documented and must be of importance because they illustrate or

describe unusual features or have important therapeutic implications. Maximum length 1200 words and a maximum of 1 table or figure. Case reports require an abstract, but this does not need to be a structured abstract and should include no more than 15 references.

Short Communications brief reports of unusual or preliminary findings. Maximum length 800 words,

two tables or figures and a maximum of 10 references.

Medical Imagery: We would like to invite submission of high-quality, interesting and instructive

images (such as clinical and other photographs, figures or diagrams, photomicrographs, or diagnostic imaging) suitable for the general readership of IJID. These should include no more than 200 words of explanatory text, and under 5 references. It is necessary to have appropriate permissions from subjects for an identifiable clinical image to be published.

Contact details

If you have any problem submitting your paper online please contact Annette Fowler at IJID@elsevier.com

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AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 4 Submission checklist

You can use this list to carry out a final check of your submission before you send it to the journal for review. Please check the relevant section in this Guide for Authors for more details.

Ensure that the following items are present:

One author has been designated as the corresponding author with contact details: • E-mail address

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All necessary files have been uploaded:

Manuscript:

• Include keywords

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• Ensure all figure and table citations in the text match the files provided • Indicate clearly if color should be used for any figures in print

Graphical Abstracts / Highlights files (where applicable) Supplemental files (where applicable)

Further considerations

• Manuscript has been 'spell checked' and 'grammar checked'

• All references mentioned in the Reference List are cited in the text, and vice versa

• Permission has been obtained for use of copyrighted material from other sources (including the Internet)

• A competing interests statement is provided, even if the authors have no competing interests to declare

• Journal policies detailed in this guide have been reviewed

• Referee suggestions and contact details provided, based on journal requirements For further information, visit our Support Center.

BEFORE YOU BEGIN Ethics in publishing

Please see our information pages on Ethics in publishing and Ethical guidelines for journal publication. Studies in humans and animals

If the work involves the use of human subjects, the author should ensure that the work described has been carried out in accordance with The Code of Ethics of the World Medical Association (Declaration of Helsinki) for experiments involving humans. The manuscript should be in line with the Recommendations for the Conduct, Reporting, Editing and Publication of Scholarly Work in Medical Journals and aim for the inclusion of representative human populations (sex, age and ethnicity) as per those recommendations. The terms sex and gender should be used correctly.

Authors should include a statement in the manuscript that informed consent was obtained for experimentation with human subjects. The privacy rights of human subjects must always be observed. All animal experiments should comply with the ARRIVE guidelines and should be carried out in accordance with the U.K. Animals (Scientific Procedures) Act, 1986 and associated guidelines, EU Directive 2010/63/EU for animal experiments, or the National Institutes of Health guide for the care and use of Laboratory animals (NIH Publications No. 8023, revised 1978) and the authors should clearly indicate in the manuscript that such guidelines have been followed. The sex of animals must be indicated, and where appropriate, the influence (or association) of sex on the results of the study. Declaration of interest

All authors must disclose any financial and personal relationships with other people or organizations that could inappropriately influence (bias) their work. Examples of potential conflicts of interest include employment, consultancies, stock ownership, honoraria, paid expert testimony, patent applications/ registrations, and grants or other funding. Authors should complete the declaration of interest

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AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 5 statement using this template and upload to the submission system at the Attach/Upload Files step. If there are no interests to declare, please choose: 'Declarations of interest: none' in the template. This statement will be published within the article if accepted. More information.

Submission declaration and verification

Submission of an article implies that the work described has not been published previously (except in the form of an abstract, a published lecture or academic thesis, see 'Multiple, redundant or concurrent publication' for more information), that it is not under consideration for publication elsewhere, that its publication is approved by all authors and tacitly or explicitly by the responsible authorities where the work was carried out, and that, if accepted, it will not be published elsewhere in the same form, in English or in any other language, including electronically without the written consent of the copyright-holder. To verify originality, your article may be checked by the originality detection service Crossref Similarity Check.

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Changes to authorship

Authors are expected to consider carefully the list and order of authors before submitting their manuscript and provide the definitive list of authors at the time of the original submission. Any addition, deletion or rearrangement of author names in the authorship list should be made only

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Only in exceptional circumstances will the Editor consider the addition, deletion or rearrangement of authors after the manuscript has been accepted. While the Editor considers the request, publication of the manuscript will be suspended. If the manuscript has already been published in an online issue, any requests approved by the Editor will result in a corrigendum.

Reporting clinical trials

Randomized controlled trials should be presented according to the CONSORT guidelines. At manuscript submission, authors must provide the CONSORT checklist accompanied by a flow diagram that illustrates the progress of patients through the trial, including recruitment, enrollment, randomization, withdrawal and completion, and a detailed description of the randomization procedure. The CONSORT checklist and template flow diagram are available online.

Registration of clinical trials

Registration in a public trials registry is a condition for publication of clinical trials in this journal in accordance with International Committee of Medical Journal Editors recommendations. Trials must register at or before the onset of patient enrolment. The clinical trial registration number should be included at the end of the abstract of the article. A clinical trial is defined as any research study that prospectively assigns human participants or groups of humans to one or more health-related interventions to evaluate the effects of health outcomes. Health-related interventions include any intervention used to modify a biomedical or health-related outcome (for example drugs, surgical procedures, devices, behavioural treatments, dietary interventions, and process-of-care changes). Health outcomes include any biomedical or health-related measures obtained in patients or participants, including pharmacokinetic measures and adverse events. Purely observational studies (those in which the assignment of the medical intervention is not at the discretion of the investigator) will not require registration.

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AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 6

Article transfer service

This journal is part of our Article Transfer Service. This means that if the Editor feels your article is more suitable in one of our other participating journals, then you may be asked to consider transferring the article to one of those. If you agree, your article will be transferred automatically on your behalf with no need to reformat. Please note that your article will be reviewed again by the new journal. More information.

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Elsevier supports responsible sharing

Find out how you can share your research published in Elsevier journals. Role of the funding source

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Our online submission system guides you stepwise through the process of entering your article details and uploading your files. The system converts your article files to a single PDF file used in the peer-review process. Editable files (e.g., Word, LaTeX) are required to typeset your article for final publication. All correspondence, including notification of the Editor's decision and requests for revision, is sent by e-mail.

Submit your article

Please submit your article via http://www.elsevier.com/locate/ijid. Referees

Authors must suggest three non-conflicted peer reviewers with expertise as much for content as for methodology of their submission, with contact details including email address. This will significantly help facilite timely peer review.

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AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 7

PREPARATION Peer review

This journal operates a single blind review process. All contributions will be initially assessed by the editor for suitability for the journal. Papers deemed suitable are then typically sent to a minimum of two independent expert reviewers to assess the scientific quality of the paper. The Editor is responsible for the final decision regarding acceptance or rejection of articles. The Editor's decision is final. More information on types of peer review.

Use of word processing software

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To avoid unnecessary errors you are strongly advised to use the 'spell-check' and 'grammar-check' functions of your word processor.

Essential title page information

• Title. Concise and informative. Titles are often used in information-retrieval systems. Avoid abbreviations and formulae where possible.

• Author names and affiliations. Please clearly indicate the given name(s) and family name(s) of each author and check that all names are accurately spelled. You can add your name between parentheses in your own script behind the English transliteration. Present the authors' affiliation addresses (where the actual work was done) below the names. Indicate all affiliations with a lower-case superscript letter immediately after the author's name and in front of the appropriate address. Provide the full postal address of each affiliation, including the country name and, if available, the e-mail address of each author.

• Corresponding author. Clearly indicate who will handle correspondence at all stages of refereeing and publication, also post-publication. This responsibility includes answering any future queries about Methodology and Materials. Ensure that the e-mail address is given and that contact details

are kept up to date by the corresponding author.

• Present/permanent address. If an author has moved since the work described in the article was done, or was visiting at the time, a 'Present address' (or 'Permanent address') may be indicated as a footnote to that author's name. The address at which the author actually did the work must be retained as the main, affiliation address. Superscript Arabic numerals are used for such footnotes. Covering letter

Manuscripts must be accompanied by a covering letter stating that the current "Instructions to Authors" have been read by all authors, thereby indicating compliance with those instructions and acceptance of the conditions posed. The letter should state that the authors have seen and agreed to the submitted version of the paper, that all who have been acknowledged as contributors or as providers of personal communications have agreed to their inclusion, that the material is original and that it has been neither published elsewhere nor submitted for publication simultaneously. In addition the letter should state that if accepted, the paper will not be published elsewhere in the same form, in English or in any other language, without written consent of the copyright holder.Please also note that Authors should provide a list of 3 potential reviewers (e-mail and affiliation) who are knowledgeable in the subject matter, have no conflict of interest, and are likely to agree to review the manuscript. Please ensure that 2 of the potential reviewers are from a different country to the authors.

Highlights

Highlights are mandatory for this journal as they help increase the discoverability of your article via search engines. They consist of a short collection of bullet points that capture the novel results of your research as well as new methods that were used during the study (if any). Please have a look at the examples here: example Highlights.

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AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 8 Highlights should be submitted in a separate editable file in the online submission system. Please use 'Highlights' in the file name and include 3 to 5 bullet points (maximum 85 characters, including spaces, per bullet point).

Abstract

A structured abstract of 150 to 200 words must be provided as part of each manuscript, except correspondence. The abstract should consist of four paragraphs, with the following headings: objectives, design or methods, results, conclusions, or alternative headings appropriate to the format of the paper. The abstract should not refer to footnotes or references.

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Although a graphical abstract is optional, its use is encouraged as it draws more attention to the online article. The graphical abstract should summarize the contents of the article in a concise, pictorial form designed to capture the attention of a wide readership. Graphical abstracts should be submitted as a separate file in the online submission system. Image size: Please provide an image with a minimum of 531 × 1328 pixels (h × w) or proportionally more. The image should be readable at a size of 5 × 13 cm using a regular screen resolution of 96 dpi. Preferred file types: TIFF, EPS, PDF or MS Office files. You can view Example Graphical Abstracts on our information site.

Authors can make use of Elsevier's Illustration Services to ensure the best presentation of their images and in accordance with all technical requirements.

Keywords

Immediately after the abstract, provide a maximum of six keywords, avoiding general and plural terms and multiple concepts (avoid, for example, 'and', 'of'). Be sparing with abbreviations: only abbreviations firmly established in the field may be used.

Abbreviations

Abbreviations in the text are discouraged. If a term appears repeatedly, however, an abbreviation may be introduced parenthetically at the initial mention of the term and used thereafter in place of the term. Abbreviations of conventional or SI units of measurement may be used without introduction.

References to drugs

The generic name of a drug should be used as a general rule; however, the full name or the commercial name of the drug, as well as the name and location of the supplier, may be given in addition if appropriate.

Bacterial nomenclature

Microbes should be referred to by their scientific names according to the binomial system used in the latest edition of Bergey's Manual of Systematic Bacteriology (The Williams and Wilkins Co.). When first mentioned, the name should be in full and written in italics. Thereafter, the genus should be abbreviated to its initial letter, e.g. 'S. aureus' not 'Staph. Aureus'. If abbreviation is likely to cause confusion or render the intended meaning(s) unclear the names of organisms should be given in full. Only those names included in the Approved Lists of Bacterial Names (Int J Syst Bacteriol 1980; 30: 225-420) and/or which have been validly published in the Int J Syst Bacteriol since January 1980 are acceptable. If there is a good reason to use a name that does not have standing in nomenclature, it should be enclosed in quotation marks and an appropriate statement concerning its use made in the text (e.g. Int J Syst Bacteriol 1980; 30: 547-556).

Symbols for units of measurement must accord with the Système International (SI)

However, blood pressure should be expressed in mmHg and haemoglobin as g/dl.

GenBank/DNA sequence linking

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For each and every accession number cited in an article, authors should type the accession number in

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(36)

AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 9

Example: "GenBank accession nos. AI631510, AI631511, AI632198, and BF223228), a B-cell

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Acknowledgements

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Formats

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Referências

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