2019/2020
Raquel Sofia da Silva Moreira
Hospitalizations for Varicella in children and adolescentes in Portugal:
2000 to 2015
Hospitalizações por Varicela em crianças e adolescentes em Portugal:
2000 a 2015
Mestrado Integrado em Medicina
Área: Pediatria
Tipologia: Dissertação
Trabalho efetuado sob a Orientação de:
Doutora Maria Inês Ferreira Águeda Azevedo
Trabalho organizado de acordo com as normas da revista:
International Journal of Infectious Diseases
Raquel Sofia da Silva Moreira
Hospitalizations for Varicella in children and adolesents in Portugal:
2000 to 2015
Hospitalizações por Varicela em crianças e adolescentes em Portugal:
2000 a 2015
“Matar o sonho é matarmo-nos. É mutilar a nossa alma. O sonho é
o que temos de realmente nosso, de impenetravelmente e
inexpugnavelmente nosso.”
Fernando Pessoa
À minha irmã, o maior amor da minha vida
Aos meus pais, pelo suporte incondicional
Aos meus amigos, que foram muitas vezes família
A todos os intervenientes neste projeto, em especial, à professora Inês,
por toda a ajuda e disponibilidade que sempre demonstraram
Um obrigada sincero a todos, por terem contribuído para que este sonho
esteja cada vez mais perto.
1
§Hospitalizations with Varicella in children and adolescents in
Portugal: 2000 to 2015
Raquel Sofia Moreira
1, José Fontoura Matias
2, Ana Reis Melo
2,3, Alberto Freitas
4,5, Inês
Azevedo
2,6,71
Faculty of Medicine, Universidade do Porto, Porto, Portugal
2
Department of Pediatrics, Centro Hospitalar São João, Porto, Portugal
3
Department of Biomedicine, Faculty of Medicine, Universidade do Porto, Porto,
Portugal
4
Department of Community Medicine, Information and Health Decision Sciences-
MEDCIDS, Faculty of Medicine, Universidade do Porto, Porto, Portugal
5
Center for Health Technology and Services Research (CINTESIS), Faculty of Medicine,
Universidade do Porto, Porto, Portugal
6
EpiUnit, Institute of Public Health, Universidade do Porto, Porto, Portugal
7
Department of Obstetrics, Gynecology and Pediatrics, Faculty of Medicine,
Universidade do Porto, Porto, Portugal
Correspondence: Inês Azevedo, Departamento de Ginecologia-Obstetrícia e Pediatria,
Faculdade de Medicina, Universidade do Porto, Alameda Professor Doutor Hernâni
Monteiro, Porto, 4200-319, Portugal. E-mail: iazevedo@med.up.pt
Declarations of interest: None
Funding: This research did not receive any specific grant from funding agencies in the
public, commercial, or not-for-profit sectors
2
Abstract
Objectives: Varicella is a common usually benign and auto-limited disease in children,
but can lead to severe complications and hospitalization. With this study, we aim to
analyze all varicella hospitalizations in order to provide epidemiological information to
help outlining preventive policies.
Design/Methods: We assessed all varicella hospitalizations in children from 0 to 17 years
of age, from 2000 to 2015, in mainland public Portuguese hospitals, using a Portuguese
administrative database. Seasonality, geographic distribution, severity, complications,
risk factors and use of diagnostic and treatment procedures were analyzed by age groups.
Results: A total of 5,120 hospitalizations were registered, with an annual rate of 17.2
hospitalizations/100,000 inhabitants. Higher number of hospitalizations occurred during
the summer period and in Southern regions. The median length of stay was of four days.
We found a high rate of severe, mostly dermatological, neurological and respiratory
complications. Of the total of patients, 0.8% were immunocompromised and 0.1% were
pregnant. Total direct hospitalization costs during the 16-year period were estimated to
be 7,110,718.70€.
Discussion: This study provides useful epidemiological data to evaluate the relevance of
including the Varicella Zoster Vaccine in our National Vaccination Program.
3
Introduction
Varicella is a common exanthematic disease, caused by Varicella Zoster Virus
(VZV) that represents a significant health burden. [1] In the absence of vaccination,
around 90% of varicella cases occur before 13 years of age, particularly in pre-school
children. [1] Despite being usually a benign and self-limited disease, varicella can lead to
severe complications requiring hospitalization.[2][3]
The main complications associated with varicella are skin and soft tissue
infections, including cellulitis and necrotizing fasciitis,[4] pneumonia, neurological
complications such as meningitis, encephalitis and ataxia, and sepsis.[5] The vaccine was
created as a strategy to prevent the infection by VZV, and its complications.[6][2]
Vaccination policies vary among countries, depending on local resources to reach and
sustain a vaccine coverage level of ≥80%, as recommended by the World Health
Organization. [7] In Portugal, the two life attenuated vaccines are available for
prescription since 2003 but are not yet included in the routine National Vaccination
Program, as thus only a small proportion of the children are vaccinated.
Up to our best knowledge, there is only one study analyzing the incidence of
hospitalizations for varicella in Portugal, using limited data from one hospital.[8] The
purpose of our study is to evaluate the hospitalizations related to varicella in children and
adolescents, in all the public Portuguese mainland hospitals, between 2000-2015, and
assess the main complications, severity and direct costs, in order to help to analyze the
potential benefit of the introduction of the varicella vaccine in the National Vaccination
Program.
4
Methods
Study Design
We conducted a retrospective observational study, including all patients who were
hospitalized from 2000 to 2015 with varicella, using the code 052.X from the
International Classification of Diseases, Ninth Revision, Clinical Modification
(ICD-9-CM). We used an administrative database from mainland public hospitals, supplied by
ACSS - Central Administration of the Health System, an agency that belongs to the
Portuguese National Health System and collects administrative and clinical information,
as diagnoses and procedures, through ICD-9-CM codification, related to all
hospitalizations. We considered only inpatient episodes, with a length of stay (LOS) of
one day (24 hours) or more, and a diagnosis of varicella at any stage.
Population data from 2000 to 2015 was considered as available on the National
Statistics Institute (Statistics Portugal - INE) website. [9]
Outcome Measures
The main outcomes were the number of hospitalizations with varicella and the rate
of admissions per age group. As secondary outcomes, we assessed the seasonality and
geographic distribution, severity, risk factors, use of diagnostic tests, required treatment
and direct costs.
Seasonality was assessed by month of hospitalization, and geographic area was
evaluated using the level II of the NUTS classification (Nomenclature of Territorial Units
for Statistics). [10]
Severity was evaluated by LOS, in-hospital mortality rate, use of invasive
(ICD-9-CM 96.70, 96.71, 96.72) or non-invasive ventilation (93.90) or of oxygen supply
(93.96) and by the main complications associated to varicella. These later were assessed
5
using ICD-9-CM codification (available at Table, Supplementary online material 1). The
risk factors considered were immunodeficiency (042, 279.X) and pregnancy (V22,
V23.83, 647.6). The diagnostic procedures analyzed were: chest x-ray (87.44, 87.49);
head CT scan (87.03); brain MRI (88.91); microscopic examination of the blood (90.5X).
As required treatments, we evaluated the use of intravenous antibiotics (00.14, 99.21,
99.22, E930.9, 960.X), intravenous fluid therapy (99.18), oxygen supply and mechanical
ventilation.
Direct costs were estimated using a budget allocation model based on
diagnosis-related groups (DRG), through the use of hospital reimbursement tables, provided by the
Portuguese Health Service and established by the Portuguese government. [11]
Data analysis and Statistical Analysis
The population was analyzed according to gender and age. Considering age, the
patients were divided into six groups: 0-28 days, 28 days-5 months, 6-11 months, 1-4
years, 5-9 years, and 10-17 years.
Descriptive analyses were carried out using using IBM SPSS Statistics 24 for Windows
and Microsoft EXCEL 2018. Frequencies and percentages were calculated taking in
account each age group. Continuous variables are presented as mean (SD) or median
(IQR, [P25; P75]), as apropriate. To calculate the rates, we used as denominator the
Population data provided by National Institute of Statistics
.Ethics
The dataset was previously anonymized and its use authorized by ACSS through a
protocol with CINTESIS/FMUP (Center for Health Technology and Services Research /
Faculty of Medicine of the University of Porto, Portugal).
6
Results
During this 16-year period, a total of 5,120 hospitalizations with varicella in
children, in mainland Portuguese public hospitals, were registered (Table 1), 3,645 of
them with Varicella as first stage of diagnose. The average number of hospitalizations
was 320 per year, providing an annual rate of hospitalization of 17.2/100,000 inhabitants.
Children between one and four years of age accounted for 58% of the total admissions;
4% occurred in newborns, 9% between 28 days and 5 months of age, 8% between 6 and
11 months of age, 16% between 5 and 9 years of age and 6% between 10 and 17 years of
age. There were two cases of congenital varicella registered. The age group between birth
and 28 days of age registered the higher admission rate, 148.2/100,000 inhabitants. (Table
1).
Males accounted for 54.7% of cases. There were four peaks of hospitalizations, in
2004, 2007, 2011 and 2014 (figure 1). The highest number of admissions occurred in
2007, with 475 admissions. The annual distribution by month showed a higher number of
cases between April and August, mostly during the warmer months (June, N=790 and
July, N=804) (figure 2). The rate of hospitalizations was higher in southern areas as
Alentejo (26.4) Lisbon (21.2) and Algarve (17.2), than in Center (16.7) and North (14.5)
regions.
The median LOS was 4 days [IQR 3-7]. The highest LOS was observed for
children between 0 and 28 days of age, with a median LOS of 7 days. The need for
mechanical ventilation was reported in 53 children, in 79% of them invasive ventilation.
Forty-nine children (0.9%) had the presence of a risk factor, immunodeficiency in 39, and
pregnancy in six.
7
The most requested diagnostic procedure was microscopic examination of the
blood (74.2%). Chest x-ray, head CT scan and brain MRI were requested in 26.3%, 4.9%
and 2.0%, respectively.
Intravenous antibiotics were prescribed in 61.8% of the patients and intravenous
fluid therapy in 47.4%. The main complications related to varicella are shown on Table
2. The most frequent were skin infections, as impetigo (10.7%), cellulitis (6.3%) and
necrotizing fasciitis (0.5 %), followed by respiratory and neurological disorders, mainly
pneumonia (4.4%) and encephalitis (3.6%).
There were eight deaths during this period (corresponding to 0.15% of the
admissions), three in children with acute lymphocytic leukemia, one with pneumococcal
septicemia, one with streptococcal septicemia, one with E. coli infection, one with
postinfectious intestinal adhesions with obstruction and one with complicated varicella
as a first diagnose.
The mean and median estimated costs directly related to the hospitalizations were
1,388.80€ and 560.0 € [560.0–1,355.8], respectively. Over the 16 years, the total costs
were estimated to be 7,110,718.70 €.
8
Discussion
This is the first study in Portugal accessing hospitalizations with varicella in
children and adolescents, in all mainland public Hospitals, and, therefore, important to
analyze the impact that varicella has in our country
.
During these sixteen years of study,
we registered a total of 5,120 hospitalizations, 3,645 which were admitted with a primary
diagnosis of varicella. These are the cases that most reliably portray hospitalizations for
complications directly related to varicella infection.
The rate of admissions longer than 24 hours was 17.3/100,000 inhabitants, which
is higher than reported in Denmark, England and Norway (11, 7.6 and 7.3,
respectively)[12][13][14] but lower when compared with data from Belgium and Spain
(29.5 and 23.6)[15][16]
The age group in which the rate of hospitalizations was higher was in newborns,
and progressively decreased as age advanced. This can be explained by the fact that
newborns have a significant risk of life-threatening complications in case of perinatal
infection and require greater attention and intravenous treatment.[17] As in Portugal
varicella is not a mandatory notifiable disease, we are unable to access the exact number
of cases for each age group, but it is predictable that the highest incidence rate of cases
occur in children between one and four years of age, as it is the age group in which most
children have their first contact with other children, in daycare centers and school, and
therefore in which there is greater risk of contagion, as it happens in other
countries.[13][16][18][19] This was shown in other countries in which varicella is a
mandatory notifiable disease.[20][21]
In this 16-year study, the number of admitted cases has varied unevenly. After the
introduction of the vaccine in the market, in 2003, the number of hospitalizations did not
show a decreasing pattern, with the highest peak of hospitalizations being recorded in
9
2007. This is probably due to a low varicella vaccine coverage in children, as according
to WHO recommendations, and national recommendations from the Pediatric Portuguese
Society, the vaccine is not recommended for healthy young children outside a National
Vaccination Schedule that can assure a high vaccine coverage. [7]
Most hospitalizations occurred between April and August, with a peak in June and July,
which is in agreement with data from Spain, which has weather conditions similar to our
country. [15]
Studies from Turkey, Poland and Sweden showed different results, with
most admissions occurring between December and March. [18][20][21]
Regarding geographic distribution, the region with the highest rate of admissions
was Alentejo, followed by Lisbon, Algarve, Center and North. The southern regions of
Portugal are the most sought areas during the summer months, when hospitalizations were
higher, which might explain why the highest proportion of cases has occurred in these
areas, but another plausible explanation could relate to a higher solar radiation in the
southern areas of Portugal, as Hervas et al suggested that solar radiation could be
important in the dynamics of varicella in Mallorca, Spain.[22]
The median LOS was four days (IQR 3 – 7), which is also consistent with data
from other studies.[12][15][19][23] It was similar for all age groups, with the interquartile
range being slightly higher at the extremes of age (0-28 days and 10-17 years). In the case
of newborns, it can be explained once again by the fact that newborns do not yet have a
well-developed immune system and so required increased vigilance from the healthcare
workers. On the other hand, complications tend to be more severe when the infection
occurs in adolescents, as it happens in adults which may justify the need for a longer
hospital stay. [7][24]
Complications were reported in 49.8% of cases, and as expected the most common
were dermatological, mainly impetigo, cellulitis and abscesses, but it important to notice
10
that necrotizing fasceiitis occurred in 0.5% of cases. Severe neurological complications
occurred in 4.4% of cases, noteworthily encephalitis, that was more commonly reported
in children older than 4 years. Respiratory complications, mainly pneumonia, were
reported in 5.1% of children and life-threatening complications such as sepsis or acute
respiratory distress syndrome were reported in around 2% of the cases. This is consistent
with other studies, in which dermatological, neurological and respiratory complications
are the three most commonly complications associated with varicella, although the
incidence for each one varies from country to country.[4][12][15][16][18][19] This can
be explained by the susceptibility of individuals for specific diseases, and other yet not
totally understood differences such as climatic factors and population density.
We were not able to directly assess the number of ICU admissions and, therefore,
we used the need for mechanical ventilation, either invasive or non-invasive, to estimate
these admissions. Around 1% of hospitalized children required mechanical ventilation,
0.8% of them non-invasive ventilation.[25]
A total of eight deaths (0.2%) were registered
during this period, consistent with the percentage found in other European
countries.[12][14][16][18] This number shows that despite being commonly a benign
disease, varicella can lead to some serious and fatal complications, especially when it
occurs in at risk patients, as happened in our cases. There were 0.8% of cases associated
with immunosuppression and 0.1% (six cases) in pregnancy. The proportion o f
hospitalized immunocompromised individuals was lower than found in other
studies.[12][16][19] These cases were identified selecting the ICD-9-CM codes related to
immunosuppression only (ICD-9-CM 0.42 and 279.X), which may explain the
differences found. There are many other conditions that may not be codified and that can
lead to immunocompromised states, that were not accounted for. This leads to an
underestimation of the percentage of hospitalized immunocompromised children. The
11
importance of pregnancy as a risk factor is not only related to the consequences that it can
bring to the mother, but was considered specially to assess the risk of congenital varicella,
which can lead to very severe and fatal complications for the baby.
The mean direct cost related to the hospitalizations was around 1,388.80€, which
is less than compared with Spain and England, where the costs are around 3,933.80€ and
2,037.64 € per patient, respectively. [13][26][27] It would be interesting to make a more
realistic approximation of costs in a future study, as it was made in Hungary.[23] It is
important to bear in mind that the full financial burden related to varicella hospitalizations
is grossly underestimated, as they take only in account the values established by the
Ministry of Health for reimbursement, according to the diagnosed-related group in
question and other costs related to parents’ days missed from work and the follow-up of
patients nor the burden of sequalae were not considered.
Our findings showed that varicella is responsible for a considerable number of
hospitalizations in our country. However, there are some limitations in our study that must
be considered. Firstly, as referred, varicella is not a mandatory notifiable disease, which
means that we cannot estimate a real rate between hospitalizations and children infected
with varicella, as done in other countries. [28][29][30] Also, it is important to be aware
that in a percentage of cases, that we cannot calculate accurately, the hospital admission
may have occurred for another reason, regardless the concomitant diagnosis of varicella,
which may end up overestimating the results. We used the ICD-9-CM codification to
identify varicella cases, yet, it is possible that the codification is not as accurate as we
intended, and it can lead to an underestimation of the incidence of hospitalizations. In
addition, the clinical record itself may not be done in the most correct way by health
professionals, leading to codification failures and, consequently, lack of information.
Even when it comes to complications, they may be underestimated, considering, in many
12
cases, that only a single code is attributed as diagnosis to a patient. On the other hand, it
can happen that only the complication associated with varicella is coded, without coding
varicella itself.
Regarding the calculation of rates, we used data from the National
Institute of Statistics. However, for the first year of life, there is no breakdown of the
population for each month of life and, as such, in the case of age groups between 0-28
days, 28 days- 5 months and 6-11 months, the population was estimated assuming a
similar distribution over the months of age, which makes the rates calculated for these
age groups an approximation of reality.
In Portugal, even though the vaccine is available since 2003, it is not part of the
National Vaccination Program. We could not access the real number of vaccinated
children, and for that reason we have not been able to reliably compare the pattern of
hospitalizations between vaccinated and unvaccinated children, as has already been done
in other countries. [31][32][33][34][35][36][37][38]
With this study, we believe we have provided important epidemiological
information on varicella admissions in mainland Portuguese hospitals, which could be
useful for considering varicella universal vaccination in the future.
Acknowledgements
The authors would like to thank the Portuguese Ministry of Health for providing
access to the hospitalization data managed by the Portuguese Central Health System
Administration (Administração Central do Sistema de Saúde).
13
References
[1]
Gershon AA, Breuer J, Cohen JI, Cohrs RJ, Gershon MD, Gilden D, et al. Varicella
zoster
virus
infection.
Nat
Rev
Dis
Prim
2015;1:1–41.
https://doi.org/10.1038/nrdp.2015.16.
[2]
Gershon AA. Is chickenpox so bad, what do we know about immunity to varicella
zoster virus, and what does it tell us about the future? J Infect 2017;74:S27–33.
https://doi.org/10.1016/S0163-4453(17)30188-3.
[3]
Ayyad A, Rkain M, Babakhouya A, Benajiba N. Varicella is not always benign.
Pan Afr Med J 2018;31:1–4. https://doi.org/10.11604/pamj.2018.31.30.16730.
[4]
Arias-Constantí V, Trenchs-Sainz de la Maza V, Sanz-Marcos NE,
Guitart-Pardellans C, Gené-Giralt A, Luaces-Cubells C. Enfermedad invasiva por
Streptococcus pyogenes: ingresos durante 6 años. Enferm Infecc Microbiol Clin
2018;36:352–6. https://doi.org/10.1016/J.EIMC.2017.06.005.
[5]
Chelsom J, Langeland N. [Varicella zoster complications]. Tidsskr Nor Laegeforen
1994;114:2486–8. https://doi.org/10.1007/s11940-013-0246-5.Varicella.
[6]
Lo Presti C, Curti C, Montana M, Bornet C, Vanelle P. Chickenpox: An update.
Médecine
Mal
Infect
2019;49:1–8.
https://doi.org/10.1016/J.MEDMAL.2018.04.395.
[7]
States M, Stra- WHO, Group A, Grade T. Varicella and herpes zoster vaccines:
WHO position paper, June 2014. Wkly Epidemiol Rec 2014;89:265–87.
[8]
Maia C, Fonseca J, Carvalho I, Santos H, Moreira D. Estudo
clínico-epidemiológico da infeção complicada por vírus varicela-zoster na idade
pediátrica. Acta Med Port 2015;28:741–8. https://doi.org/10.20344/amp.6264.
[9]
Statistics Portugal. Inst Nac Estat n.d. http://www.ine.pt/.
14
http://https//ec.europa.eu/eurostat/web/nuts/nuts-maps (accessed December 10,
2019).
[11] Ministério da Saúde. Portaria n
o839-A/2009 de 31 de Julho 2009.
[12] HELMUTH IG, POULSEN A, MØLBAK K. A national register-based study of
paediatric varicella hospitalizations in Denmark 2010–2016. Epidemiol Infect
2017;145:2683–93. https://doi.org/10.1017/S0950268817001777.
[13] Hobbelen PHF, Stowe J, Amirthalingam G, Miller L, van Hoek AJ. The burden of
hospitalisation for varicella and herpes zoster in England from 2004 to 2013. J
Infect 2016;73:241–53. https://doi.org/10.1016/j.jinf.2016.05.008.
[14] Mirinaviciute G, Kristensen E, Nakstad B, Flem E. Varicella-related Primary
Health-care Visits, Hospitalizations and Mortality in Norway, 2008-2014. Pediatr
Infect Dis J 2017;36:1032–8. https://doi.org/10.1097/INF.0000000000001656.
[15] Guillén JM, De La Luz Samaniego-Colmenero M, Hernández-Barrera V, Gil A.
Varicella paediatric hospitalizations in Spain. Epidemiol Infect 2009;137:519–25.
https://doi.org/10.1017/S0950268808001131.
[16] Blumental S, Sabbe M, Lepage P, Asscherickx W, Audiens H, Azou M, et al.
Varicella paediatric hospitalisations in Belgium: A 1-year national survey. Arch
Dis Child 2016;101:16–22. https://doi.org/10.1136/archdischild-2015-308283.
[17] Blumental S, Lepage P. Management of varicella in neonates and infants. BMJ
Paediatr Open 2019;3:1–6. https://doi.org/10.1136/bmjpo-2019-000433.
[18] Widgren K, Giesecke J, Lindquist L, Tegnell A. The burden of chickenpox disease
in Sweden. BMC Infect Dis 2016;16:1–8.
https://doi.org/10.1186/s12879-016-1957-5.
[19] Smok B, Franczak J, Domagalski K, Pawłowska M. Varicella complications in
children one-site Polish population – a 19- year long survey. Przegl Epidemiol
15
2018;72:459–67. https://doi.org/10.32394/pe.72.4.21.
[20] Dinleyici EC, Kurugol Z, Turel O, Hatipoglu N, Devrim I, Agin H, et al. The
epidemiology and economic impact of varicella-related hospitalizations in Turkey
from 2008 to 2010: a nationwide survey during the pre-vaccine era (VARICOMP
study). Eur J Pediatr 2012;171:817–25.
https://doi.org/10.1007/s00431-011-1650-z.
[21] Królasik A, Paradowska-Stankiewicz I. Chickenpox in Poland in 2016. Przegl
Epidemiol 2018;72:287–92. https://doi.org/10.32394/pe.72.3.5.
[22] Hervás D, Hervás-Masip J, Nicolau A, Reina J, Hervás JA. Solar radiation and
water vapor pressure to forecast chickenpox epidemics. Eur J Clin Microbiol Infect
Dis 2015;34:439–46. https://doi.org/10.1007/s10096-014-2243-3.
[23] Meszner Z, Molnar Z, Rampakakis E, Yang HK, Kuter BJ, Wolfson LJ. Economic
burden of varicella in children 1-12 Years of age in Hungary, 2011-2015. BMC
Infect Dis 2017;17:1–11. https://doi.org/10.1186/s12879-017-2575-6.
[24] BOËLLE PY, HANSLIK T. Varicella in non-immune persons: incidence,
hospitalization and mortality rates. Epidemiol Infect 2002;129:599–606.
https://doi.org/10.1017/s0950268802007720.
[25] John KG, John TJ, Taljaard JJ, Lalla U, Esterhuizen TM, Irusen EM, et al. The
outcome of severe varicella pneumonia with respiratory failure admitted to the
intensive care unit for mechanical ventilation. Eur Respir J 2018;52:10–3.
https://doi.org/10.1183/13993003.00407-2018.
[26] Guillen JM, Gil-Prieto R, Alvaro A, Gil A. Burden of adult varicella
hospitalizations
in
Spain
(2001-2007).
Hum
Vaccin
2010;6:659–63.
https://doi.org/10.4161/hv.6.8.12014.
16
secondary
care,
England,
2004
to
2017.
Euro
Surveill
2019;24.
https://doi.org/10.2807/1560-7917.ES.2019.24.42.1900233.
[28] Chan DYW, Edmunds WJ, Chan HL, Chan V, Lam YCK, Thomas SL, et al. The
changing epidemiology of varicella and herpes zoster in Hong Kong before
universal varicella vaccination in 2014. Epidemiol Infect 2018;146:723–34.
https://doi.org/10.1017/S0950268818000444.
[29] European Centre for Disease Prevention and Control. ECDC Guidance - Varicella
vaccination in the European Union. 2015.
[30] Almuneef M, Memish ZA, Balkhy HH, Alotaibi B, Helmy M. Chickenpox
complications in Saudi Arabia: Is it time for routine varicella vaccination? Int J
Infect Dis 2006;10:156–61. https://doi.org/10.1016/j.ijid.2005.02.008.
[31] Zoch-Lesniak B, Tolksdorf K, Siedler A. Trends in herpes zoster epidemiology in
Germany based on primary care sentinel surveillance data, 2005–2016. Hum
Vaccines
Immunother
2018;14:1807–14.
https://doi.org/10.1080/21645515.2018.1446718.
[32] Morino S, Tanaka-Taya K, Satoh H, Arai S, Takahashi T, Sunagawa T, et al.
Descriptive epidemiology of varicella based on national surveillance data before
and after the introduction of routine varicella vaccination with two doses in Japan,
2000–2017.
Vaccine
2018;36:5977–82.
https://doi.org/10.1016/J.VACCINE.2018.08.048.
[33] Scotta MC, Paternina-de la Ossa R, Lumertz MS, Jones MH, Mattiello R, Pinto
LA. Early impact of universal varicella vaccination on childhood varicella and
herpes
zoster
hospitalizations
in
Brazil.
Vaccine
2018;36:280–4.
https://doi.org/10.1016/J.VACCINE.2017.11.057.
17
2004;144:68–74.
[35] Requirements E. T HE E F F EC T IVE NE SS OF TH E VA RICELL A VACC
INE IN C LINICA L PRAC TIC E THE EFFECTIVENESS OF THE
VARICELLA VACCINE IN CLINICAL PRACTICE 2001;344:955–60.
[36] Pozza F, Piovesan C, Russo F, Bella A, Pezzotti P, Emberti Gialloreti L. Impact of
universal vaccination on the epidemiology of varicella in Veneto, Italy. Vaccine
2011;29:9480–7. https://doi.org/10.1016/j.vaccine.2011.10.022.
[37] Neyro SE, D M, Ferolla FM, D M, Molise C, D M. Impacto clínico y
epidemiológico de las infecciones por varicela en niños previo a la introducción de
la vacuna al Calendario Nacional de Argentina. Arch Argent Pediatr 2019;117:12–
8. https://doi.org/10.5546/aap.2019.12.
[38] Hagemann C, Krämer A, Grote V, Liese JG, Streng A. Specific Varicella-Related
Complications and Their Decrease in Hospitalized Children after the Introduction
of General Varicella Vaccination: Results from a Multicenter Pediatric Hospital
Surveillance Study in Bavaria (Germany). Infect Dis Ther 2019;8:597–611.
https://doi.org/10.1007/s40121-019-00273-6.
18
19
0- 28 days 28 days - 5 months 6- 11 months 1- 4 years 5- 9 years 10-17 years Total
Total Hospitalizations, N (%) 189 (4) 443 (9) 411 (8) 2,948 (58) 824 (16) 305 (6) 5,120
Hospitalization Rate (per 100,000) 148.2 69.5 53.7 46.8 10.2 2.24 17.3 Severity
LOS, median [IQR] 7 [5-9] 5 [3-7] 4 [3-6] 4 [2-6] 4 [2-7] 5 [3-8] 4 [3-7]
Mortality , N (%) 0 1 (0.22) 0 4 (0.14) 2 (0.14) 1 (0.33) 8 (0.15)
Mechanical Ventilation, N(%) 8 (4.2) 4 (0.9) 7 (1.7) 20 (0.7) 9 (1.1) 5 (1.6) 53 (1.0)
Invasive Ventilation , N (%) 3 (1.6) 0 1 (0.2) 4 (0.1) 1 (0.1) 2 (0.6) 11 (0.2)
Non- Invasive Ventilation , N (%) 5 (2.6) 4 (0.9) 6 (1.5) 16 (0.5) 8 (1.0) 3 (1.0) 42 (0.8)
Risk Groups Immunodeficiency, N (%) 1 (0.5) 2 (0.5) 1 (0.2) 17 (0.6) 12 (1.5) 6 (2.0) 39 (0.8) Pregnancy, N (%) 0 0 0 0 0 6 (2.0) 6 (0.1) DiagnosticProcedures ChestX-ray, N (%) 16 (8.5) 109 (24.6) 145 (34.5) 831 (28.2) 169 (20.5) 77 (25.2) 1,347 (26.3) Head CT scan, N(%) 1 (0.5) 6 (1.4) 9 (2.2) 126 (4.3) 78 (9.5) 30 (9.8) 250 (4.9) Brain MRI, N(%) 1 (0.5) 4 (0.5) 4 (1.0) 51 (1.7) 29 (3.5) 12 (3.9) 101 (2.0)
Microscopic examination of the blood, N
(%) 125 (66.1) 305 (68.8) 309 (75.2) 2,258 (76.6) 600 (72.8) 202 (66.2) 3,799 (74.2)
Required treatment
Intravenous antibiotics, N (%) 92 (48.7) 210 (47.4) 262 (63.7) 1,962 (66.6) 475 (57.6) 163 (53.4) 3,164 (61.8) Fluid therapy, N (%) 46 (24.3) 171 (38.6) 210 (51.1) 1,441 (48.9) 416 (50.5) 141 (46.2) 2,425 (47.4) Oxygen supply, N (%) 5 (2.6) 23 (5.2) 34 (8.3) 130 (4.4) 20 (2.4) 6 (2.0) 218 (4.3)
Table 1 - Characteristics of hospitalizations due to varicella in pediatric patients from 2000 to 2015, in mainland Portugal, by age groups
20 Figure 1 - Annual variation of Varicella-related hospitalizations, from 2000 to 2015, for each age group
2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 0 50 100 150 200 250 300 Year N um b er o f H o spi ta li z a ti o n s
21 Figure 2: Monthly variation of Varicella-related hospitalizations, from 2000 to 2015, for each age group
Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec
0 100 200 300 400 500 600 700 800 900 Month Cum ul a ti v e n um b er o f h o spi ta li z at io n s
22
0- 28 days 28 days - 5 months 6- 11 months 1- 4 years 5- 9 years 10-17 years Total
Skin Complications, N (%) 7 (3.7) 44 (9.9) 95 (23.1) 690 (23.4) 130 (15.8) 34 (11.1) 1000 (19.6) Abcess 0 2 (0.5) 10 (2.4) 76 (2.6) 11 (1.3) 4 (1.3) 103 (2.0) Cellulitis 0 14 (3.2) 29 (7.1) 228 (7.7) 39 (4.7) 12 (3.9) 322 (6.3) Necrotizing fasceiitis 0 0 2 (0.5) 18 (0.6) 7 (0.8) 0 27 (0.5) Impetigo 7 (3.7) 28 (6.3) 54 (13.1) 368 (1.2) 73 (8.9) 18 (5.9) 548 (10.7) Neurological Complications, N (%) 0 (0) 3 (0.7) 10 (2.4) 173 (5.9) 91 (11.0) 28 (9.2) 305 (6.0) Myelitis 0 0 0 1 (0.0) 5 (0.6) 0 6 (0.1) Encephalitis 0 2 (0.5) 2 (0.5) 93 (3.2) 69 (8.4) 19 (6.2) 185 (3.6) Meningitis 0 0 0 1 (0.0) 1 (0.1) 1 (0.3) 3 (0.1) Cerebellar Ataxia 0 0 0 11 (0.4) 7 (0.8) 4 (1.3) 22 (0.4) Febrile seizures 0 1 (0.2) 8 (1.9) 67 (2.3) 9 (1.1) 4 (1.3) 89 (1.7) Respiratory Complications, N (%) 3 (1.6) 13 (2.9) 27 (6.6) 168 (5.7) 40 (4.9) 10 (3.3) 261 (5.1) Acute tonsillitis 0 1 (0.2) 1 (0.2) 26 (0.9) 8 (1.0) 1 (0.3) 37 (0.7) Pneumonia 3 (1.6) 12 (2.7) 26 (6.3) 142 (4.8) 32 (3.9) 9 (3.0) 224 (4.4) Osteomuscular Complications, N(%) 0 (0) 0 (0) 9 (2.2) 47 (1.6) 16 (1.9) 2 (0.7) 68 (1.3) Mastoiditis 0 0 1 (0.2) 9 (0.3) 2 (0.2) 1 (0.3) 13 (0.3) Assseptic Arthritis 0 0 7 (1.7) 31 (1.1) 12 (1.5) 0 50 (1.0) Osteomyelitis 0 0 1 (0.2) 7 (0.2) 2 (0.2) 1 (0.3) 11 (0.2) Gastrointestinal Complications, N(%) 0 (0) 6 (1.4) 10 (2.4) 42 (1.4) 8 (1.0) 2 (0.7) 68 (1.3) Gastroenteritis 0 6 (1.4) 10 (2.4) 42 (1.4) 8 (1.0) 2 (0.7) 68 (1.3) Hematological Complications, N(%) 2 (1.1) 10 (2.3) 3 (0.7) 40 (1.4) 10 (1.2) 10 (3.3) 75 (1.5) Thrombocytopenia 0 0 0 4 (0.1) 1 (0.1) 1 (0.3) 6 (0.1) Neutropenia 2 (1.1) 10 (2.3) 3 (0.7) 36 (1.2) 9 (1.1) 9 (3.0) 69 (1.3) Infectious, other N(%) 6 (3.2) 13 (2.9) 19 (4.6) 73 (2.5) 21 (2.5) 2 (0.7) 134 (2.6) Sepsis 5 (2.6) 7 (1.6) 13 (3.2) 34 (1.2) 12 (1.5) 1 (0.3) 72 (1.4) ARDS 0 2 (0.5) 1 (0.2) 12 (0.4) 3 (0.4) 1 (0.3) 19 (0.4) Hyponatremia 1 (0.5) 4 (0.9) 5 (1.2) 27 (0.9) 6 (0.7) 0 43 (0.8) Congenital Varicella, N(%) 2 (1.1) 0 0 0 0 0 2 (0.04)
AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 1
INTERNATIONAL JOURNAL OF INFECTIOUS
DISEASES
Official Publication of the International Society for Infectious Diseases
AUTHOR INFORMATION PACK
TABLE OF CONTENTS
.XXX
.• Description
• Impact Factor
• Abstracting and Indexing
• Editorial Board
• Guide for Authors
p.1
p.1
p.1
p.1
p.3
ISSN: 1201-9712DESCRIPTION
.The International Journal of Infectious Diseases (IJID) is published monthly by the International Society for Infectious Diseases. IJID is a peer-reviewed, open access journal and publishes original clinical and laboratory-based research, together with reports of clinical trials, reviews, and some case reports dealing with the epidemiology, clinical diagnosis, treatment, and control of infectious diseases with particular emphasis placed on those diseases that are most common in under-resourced countries.
IMPACT FACTOR
.
2018: 3.538 © Clarivate Analytics Journal Citation Reports 2019
ABSTRACTING AND INDEXING
.
Directory of Open Access Journals (DOAJ)
EDITORIAL BOARD
.
Editor-in-Chief
Eskild Petersen, Aarhus University Hospital Institute of Clinical Medicine Department of Infectious Diseases, Skejbygaardsvej 100, 8200, Aarhus, Denmark
Editors
Lucille Blumberg, National Institute for Communicable Diseases, South Africa
Shui Shan Lee, Chinese University of Hong Kong Stanley Ho Centre for Emerging Infectious Diseases, /F Postgraduate Educ Centre,Prince of Wales Hospit, Hong Kong, Hong Kong
Ira Praharaj, Christian Medical College Vellore, 632004, Vellore, India
Sean Wasserman, University of Cape Town Institute of Infectious Disease and Molecular Medicine, Observatory 7925, Cape Town, South Africa
Editorial Office
Isabela Caus
Editorial Advisory Board
AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 2 Ashish Bhalla, Chandigarh, India
Bin Cao, Beijing, China
Ron Dagan, Be'er Sheva, Israel
David Fisman, Toronto, Ontario, Canada Rodrigo Guabiraba, Nouzilly, France Hajjeh, Egypt
Mark Holodniy, Stanford, California, United States Yao Kaihu, Beijing, China
Keith Klugman, Atlanta, Georgia, United States Hakan Leblebicioglu, Samsun, Turkey
Marc Mendelson, Cape Town, South Africa Xavier Sáez-Llorens, Panama City, Panama
Program Coordinator
AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 3
GUIDE FOR AUTHORS
.
Your Paper Your Way
We now differentiate between the requirements for new and revised submissions. You may choose to submit your manuscript as a single Word or PDF file to be used in the refereeing process. Only when your paper is at the revision stage, will you be requested to put your paper in to a 'correct format' for acceptance and provide the items required for the publication of your article.
To find out more, please visit the Preparation section below.
The International Journal of Infectious Diseases(IJID) is published monthly by the International Society for Infectious Diseases.
IJID is a peer-reviewed, open access journal and publishes position papers, original clinical and
laboratory-based research, together with reports of clinical trials, reviews, exceptional case reports. The interest areas of the IJID are epidemiology, clinical diagnosis, treatment, and control of infectious diseases with particular emphasis placed on under-resourced countries. The IJID does not publish veterinary studies and studies based on animal models alone.
Manuscript types
Original articles on infectious disease topics of broad interest. We particularly welcome papers that
discuss epidemiological aspects of international health, clinical reports, clinical trials and reports of laboratory investigations. Original articles should not exceed 3500 words in length.The word count is from the introduction through to the end of the conclusion/discussion and does not include abstract, tables, figures, acknowledgements or reference list.
Reviews on topics of importance to readers in diverse geographic areas. These should be
comprehensive and fully referenced.
Article requirements: Word count for the main part of the manuscript from introduction to conclusion/ discussion: 2,500 to max of 4000 words. One or two figures/tables, a brief abstract, an introduction, a conclusion, and no more than 30 references.
Perspectives are papers that advance a hypothesis or represent an opinion relating to a topic of
current interest or importance. They should be fully referenced, and should not exceed 2000 words in length.
Correspondence relating to papers recently published in the Journal, or containing brief reports of
unusual or preliminary findings. Maximum length 400 words, one table or figure and a maximum of 10 references.
Case Reports must be carefully documented and must be of importance because they illustrate or
describe unusual features or have important therapeutic implications. Maximum length 1200 words and a maximum of 1 table or figure. Case reports require an abstract, but this does not need to be a structured abstract and should include no more than 15 references.
Short Communications brief reports of unusual or preliminary findings. Maximum length 800 words,
two tables or figures and a maximum of 10 references.
Medical Imagery: We would like to invite submission of high-quality, interesting and instructive
images (such as clinical and other photographs, figures or diagrams, photomicrographs, or diagnostic imaging) suitable for the general readership of IJID. These should include no more than 200 words of explanatory text, and under 5 references. It is necessary to have appropriate permissions from subjects for an identifiable clinical image to be published.
Contact details
If you have any problem submitting your paper online please contact Annette Fowler at IJID@elsevier.com
AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 4 Submission checklist
You can use this list to carry out a final check of your submission before you send it to the journal for review. Please check the relevant section in this Guide for Authors for more details.
Ensure that the following items are present:
One author has been designated as the corresponding author with contact details: • E-mail address
• Full postal address
All necessary files have been uploaded:
Manuscript:
• Include keywords
• All figures (include relevant captions)
• All tables (including titles, description, footnotes)
• Ensure all figure and table citations in the text match the files provided • Indicate clearly if color should be used for any figures in print
Graphical Abstracts / Highlights files (where applicable) Supplemental files (where applicable)
Further considerations
• Manuscript has been 'spell checked' and 'grammar checked'
• All references mentioned in the Reference List are cited in the text, and vice versa
• Permission has been obtained for use of copyrighted material from other sources (including the Internet)
• A competing interests statement is provided, even if the authors have no competing interests to declare
• Journal policies detailed in this guide have been reviewed
• Referee suggestions and contact details provided, based on journal requirements For further information, visit our Support Center.
BEFORE YOU BEGIN Ethics in publishing
Please see our information pages on Ethics in publishing and Ethical guidelines for journal publication. Studies in humans and animals
If the work involves the use of human subjects, the author should ensure that the work described has been carried out in accordance with The Code of Ethics of the World Medical Association (Declaration of Helsinki) for experiments involving humans. The manuscript should be in line with the Recommendations for the Conduct, Reporting, Editing and Publication of Scholarly Work in Medical Journals and aim for the inclusion of representative human populations (sex, age and ethnicity) as per those recommendations. The terms sex and gender should be used correctly.
Authors should include a statement in the manuscript that informed consent was obtained for experimentation with human subjects. The privacy rights of human subjects must always be observed. All animal experiments should comply with the ARRIVE guidelines and should be carried out in accordance with the U.K. Animals (Scientific Procedures) Act, 1986 and associated guidelines, EU Directive 2010/63/EU for animal experiments, or the National Institutes of Health guide for the care and use of Laboratory animals (NIH Publications No. 8023, revised 1978) and the authors should clearly indicate in the manuscript that such guidelines have been followed. The sex of animals must be indicated, and where appropriate, the influence (or association) of sex on the results of the study. Declaration of interest
All authors must disclose any financial and personal relationships with other people or organizations that could inappropriately influence (bias) their work. Examples of potential conflicts of interest include employment, consultancies, stock ownership, honoraria, paid expert testimony, patent applications/ registrations, and grants or other funding. Authors should complete the declaration of interest
AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 5 statement using this template and upload to the submission system at the Attach/Upload Files step. If there are no interests to declare, please choose: 'Declarations of interest: none' in the template. This statement will be published within the article if accepted. More information.
Submission declaration and verification
Submission of an article implies that the work described has not been published previously (except in the form of an abstract, a published lecture or academic thesis, see 'Multiple, redundant or concurrent publication' for more information), that it is not under consideration for publication elsewhere, that its publication is approved by all authors and tacitly or explicitly by the responsible authorities where the work was carried out, and that, if accepted, it will not be published elsewhere in the same form, in English or in any other language, including electronically without the written consent of the copyright-holder. To verify originality, your article may be checked by the originality detection service Crossref Similarity Check.
Use of inclusive language
Inclusive language acknowledges diversity, conveys respect to all people, is sensitive to differences, and promotes equal opportunities. Articles should make no assumptions about the beliefs or commitments of any reader, should contain nothing which might imply that one individual is superior to another on the grounds of race, sex, culture or any other characteristic, and should use inclusive language throughout. Authors should ensure that writing is free from bias, for instance by using 'he or she', 'his/her' instead of 'he' or 'his', and by making use of job titles that are free of stereotyping (e.g. 'chairperson' instead of 'chairman' and 'flight attendant' instead of 'stewardess').
Authorship
All authors should have made substantial contributions to all of the following: (1) the conception and design of the study, or acquisition of data, or analysis and interpretation of data, (2) drafting the article or revising it critically for important intellectual content, (3) final approval of the version to be submitted.
Changes to authorship
Authors are expected to consider carefully the list and order of authors before submitting their manuscript and provide the definitive list of authors at the time of the original submission. Any addition, deletion or rearrangement of author names in the authorship list should be made only
before the manuscript has been accepted and only if approved by the journal Editor. To request such
a change, the Editor must receive the following from the corresponding author: (a) the reason for the change in author list and (b) written confirmation (e-mail, letter) from all authors that they agree with the addition, removal or rearrangement. In the case of addition or removal of authors, this includes confirmation from the author being added or removed.
Only in exceptional circumstances will the Editor consider the addition, deletion or rearrangement of authors after the manuscript has been accepted. While the Editor considers the request, publication of the manuscript will be suspended. If the manuscript has already been published in an online issue, any requests approved by the Editor will result in a corrigendum.
Reporting clinical trials
Randomized controlled trials should be presented according to the CONSORT guidelines. At manuscript submission, authors must provide the CONSORT checklist accompanied by a flow diagram that illustrates the progress of patients through the trial, including recruitment, enrollment, randomization, withdrawal and completion, and a detailed description of the randomization procedure. The CONSORT checklist and template flow diagram are available online.
Registration of clinical trials
Registration in a public trials registry is a condition for publication of clinical trials in this journal in accordance with International Committee of Medical Journal Editors recommendations. Trials must register at or before the onset of patient enrolment. The clinical trial registration number should be included at the end of the abstract of the article. A clinical trial is defined as any research study that prospectively assigns human participants or groups of humans to one or more health-related interventions to evaluate the effects of health outcomes. Health-related interventions include any intervention used to modify a biomedical or health-related outcome (for example drugs, surgical procedures, devices, behavioural treatments, dietary interventions, and process-of-care changes). Health outcomes include any biomedical or health-related measures obtained in patients or participants, including pharmacokinetic measures and adverse events. Purely observational studies (those in which the assignment of the medical intervention is not at the discretion of the investigator) will not require registration.
AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 6
Article transfer service
This journal is part of our Article Transfer Service. This means that if the Editor feels your article is more suitable in one of our other participating journals, then you may be asked to consider transferring the article to one of those. If you agree, your article will be transferred automatically on your behalf with no need to reformat. Please note that your article will be reviewed again by the new journal. More information.
Copyright
Upon acceptance of an article, authors will be asked to complete an 'Exclusive License Agreement' (see more information on this). Permitted third party reuse of open access articles is determined by the author's choice of user license.
Author rights
As an author you (or your employer or institution) have certain rights to reuse your work. More information.
Elsevier supports responsible sharing
Find out how you can share your research published in Elsevier journals. Role of the funding source
You are requested to identify who provided financial support for the conduct of the research and/or preparation of the article and to briefly describe the role of the sponsor(s), if any, in study design; in the collection, analysis and interpretation of data; in the writing of the report; and in the decision to submit the article for publication. If the funding source(s) had no such involvement then this should be stated.
Open access
Please visit our Open Access page for more information.
Language (usage and editing services)
Please write your text in good English (American or British usage is accepted, but not a mixture of these). Authors who feel their English language manuscript may require editing to eliminate possible grammatical or spelling errors and to conform to correct scientific English may wish to use the English Language Editing service available from Elsevier's Author Services.
Informed consent and patient details
Patients have a right to privacy. Therefore identifying information, including patients images, names, initials, or hospital numbers, should not be included in videos, recordings, written descriptions, photographs, and pedigrees unless the information is essential for scientific purposes and you have obtained written informed consent for publication in print and electronic form from the patient (or parent, guardian or next of kin where applicable). If such consent is made subject to any conditions, Elsevier must be made aware of all such conditions. Written consents must be provided to Elsevier on request. Even where consent has been given, identifying details should be omitted if they are not essential. If identifying characteristics are altered to protect anonymity, such as in genetic pedigrees, authors should provide assurance that alterations do not distort scientific meaning and editors should so note. If such consent has not been obtained, personal details of patients included in any part of the paper and in any supplementary materials (including all illustrations and videos) must be removed before submission.
Submission
Our online submission system guides you stepwise through the process of entering your article details and uploading your files. The system converts your article files to a single PDF file used in the peer-review process. Editable files (e.g., Word, LaTeX) are required to typeset your article for final publication. All correspondence, including notification of the Editor's decision and requests for revision, is sent by e-mail.
Submit your article
Please submit your article via http://www.elsevier.com/locate/ijid. Referees
Authors must suggest three non-conflicted peer reviewers with expertise as much for content as for methodology of their submission, with contact details including email address. This will significantly help facilite timely peer review.
AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 7
PREPARATION Peer review
This journal operates a single blind review process. All contributions will be initially assessed by the editor for suitability for the journal. Papers deemed suitable are then typically sent to a minimum of two independent expert reviewers to assess the scientific quality of the paper. The Editor is responsible for the final decision regarding acceptance or rejection of articles. The Editor's decision is final. More information on types of peer review.
Use of word processing software
It is important that the file be saved in the native format of the word processor used. The text should be in single-column format. Keep the layout of the text as simple as possible. Most formatting codes will be removed and replaced on processing the article. In particular, do not use the word processor's options to justify text or to hyphenate words. However, do use bold face, italics, subscripts, superscripts etc. When preparing tables, if you are using a table grid, use only one grid for each individual table and not a grid for each row. If no grid is used, use tabs, not spaces, to align columns. The electronic text should be prepared in a way very similar to that of conventional manuscripts (see also the Guide to Publishing with Elsevier). Note that source files of figures, tables and text graphics will be required whether or not you embed your figures in the text. See also the section on Electronic artwork.
To avoid unnecessary errors you are strongly advised to use the 'spell-check' and 'grammar-check' functions of your word processor.
Essential title page information
• Title. Concise and informative. Titles are often used in information-retrieval systems. Avoid abbreviations and formulae where possible.
• Author names and affiliations. Please clearly indicate the given name(s) and family name(s) of each author and check that all names are accurately spelled. You can add your name between parentheses in your own script behind the English transliteration. Present the authors' affiliation addresses (where the actual work was done) below the names. Indicate all affiliations with a lower-case superscript letter immediately after the author's name and in front of the appropriate address. Provide the full postal address of each affiliation, including the country name and, if available, the e-mail address of each author.
• Corresponding author. Clearly indicate who will handle correspondence at all stages of refereeing and publication, also post-publication. This responsibility includes answering any future queries about Methodology and Materials. Ensure that the e-mail address is given and that contact details
are kept up to date by the corresponding author.
• Present/permanent address. If an author has moved since the work described in the article was done, or was visiting at the time, a 'Present address' (or 'Permanent address') may be indicated as a footnote to that author's name. The address at which the author actually did the work must be retained as the main, affiliation address. Superscript Arabic numerals are used for such footnotes. Covering letter
Manuscripts must be accompanied by a covering letter stating that the current "Instructions to Authors" have been read by all authors, thereby indicating compliance with those instructions and acceptance of the conditions posed. The letter should state that the authors have seen and agreed to the submitted version of the paper, that all who have been acknowledged as contributors or as providers of personal communications have agreed to their inclusion, that the material is original and that it has been neither published elsewhere nor submitted for publication simultaneously. In addition the letter should state that if accepted, the paper will not be published elsewhere in the same form, in English or in any other language, without written consent of the copyright holder.Please also note that Authors should provide a list of 3 potential reviewers (e-mail and affiliation) who are knowledgeable in the subject matter, have no conflict of interest, and are likely to agree to review the manuscript. Please ensure that 2 of the potential reviewers are from a different country to the authors.
Highlights
Highlights are mandatory for this journal as they help increase the discoverability of your article via search engines. They consist of a short collection of bullet points that capture the novel results of your research as well as new methods that were used during the study (if any). Please have a look at the examples here: example Highlights.
AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 8 Highlights should be submitted in a separate editable file in the online submission system. Please use 'Highlights' in the file name and include 3 to 5 bullet points (maximum 85 characters, including spaces, per bullet point).
Abstract
A structured abstract of 150 to 200 words must be provided as part of each manuscript, except correspondence. The abstract should consist of four paragraphs, with the following headings: objectives, design or methods, results, conclusions, or alternative headings appropriate to the format of the paper. The abstract should not refer to footnotes or references.
Graphical abstract
Although a graphical abstract is optional, its use is encouraged as it draws more attention to the online article. The graphical abstract should summarize the contents of the article in a concise, pictorial form designed to capture the attention of a wide readership. Graphical abstracts should be submitted as a separate file in the online submission system. Image size: Please provide an image with a minimum of 531 × 1328 pixels (h × w) or proportionally more. The image should be readable at a size of 5 × 13 cm using a regular screen resolution of 96 dpi. Preferred file types: TIFF, EPS, PDF or MS Office files. You can view Example Graphical Abstracts on our information site.
Authors can make use of Elsevier's Illustration Services to ensure the best presentation of their images and in accordance with all technical requirements.
Keywords
Immediately after the abstract, provide a maximum of six keywords, avoiding general and plural terms and multiple concepts (avoid, for example, 'and', 'of'). Be sparing with abbreviations: only abbreviations firmly established in the field may be used.
Abbreviations
Abbreviations in the text are discouraged. If a term appears repeatedly, however, an abbreviation may be introduced parenthetically at the initial mention of the term and used thereafter in place of the term. Abbreviations of conventional or SI units of measurement may be used without introduction.
References to drugs
The generic name of a drug should be used as a general rule; however, the full name or the commercial name of the drug, as well as the name and location of the supplier, may be given in addition if appropriate.
Bacterial nomenclature
Microbes should be referred to by their scientific names according to the binomial system used in the latest edition of Bergey's Manual of Systematic Bacteriology (The Williams and Wilkins Co.). When first mentioned, the name should be in full and written in italics. Thereafter, the genus should be abbreviated to its initial letter, e.g. 'S. aureus' not 'Staph. Aureus'. If abbreviation is likely to cause confusion or render the intended meaning(s) unclear the names of organisms should be given in full. Only those names included in the Approved Lists of Bacterial Names (Int J Syst Bacteriol 1980; 30: 225-420) and/or which have been validly published in the Int J Syst Bacteriol since January 1980 are acceptable. If there is a good reason to use a name that does not have standing in nomenclature, it should be enclosed in quotation marks and an appropriate statement concerning its use made in the text (e.g. Int J Syst Bacteriol 1980; 30: 547-556).
Symbols for units of measurement must accord with the Système International (SI)
However, blood pressure should be expressed in mmHg and haemoglobin as g/dl.
GenBank/DNA sequence linking
Many Elsevier journals cite "gene accession numbers" in their running text and footnotes. Gene accession numbers refer to genes or DNA sequences about which further information can be found in the databases at the National Center for Biotechnical Information (NCBI) at the National Library of Medicine. Elsevier authors wishing to enable other scientists to use the accession numbers cited in their papers via links to these sources, should type this information in the following manner:
For each and every accession number cited in an article, authors should type the accession number in
bold, underlined text. Letters in the accession number should always be capitalised. (See example
below). This combination of letters and format will enable Elsevier's typesetters to recognise the relevant texts as accession numbers and add the required link to GenBank's sequences.
AUTHOR INFORMATION PACK 19 Apr 2020 www.elsevier.com/locate/ijid 9
Example: "GenBank accession nos. AI631510, AI631511, AI632198, and BF223228), a B-cell
tumor from a chronic lymphatic leukemia (GenBank accession no. BE675048), and a T-cell lymphoma (GenBank accession no. AA361117)".
Authors are encouraged to check accession numbers used very carefully. An error in a letter or
number can result in a dead link. In the final version of the printed article, the accession number
text will not appear bold or underlined. In the final version of the electronic copy, the accession number text will be linked to the appropriate source in the NCBI databases enabling readers to go directly to that source from the article.
Acknowledgements
Collate acknowledgements in a separate section at the end of the article before the references and do not, therefore, include them on the title page, as a footnote to the title or otherwise. List here those individuals who provided help during the research (e.g., providing language help, writing assistance or proof reading the article, etc.).
Formatting of funding sources
List funding sources in this standard way to facilitate compliance to funder's requirements:
Funding: This work was supported by the National Institutes of Health [grant numbers xxxx, yyyy]; the Bill & Melinda Gates Foundation, Seattle, WA [grant number zzzz]; and the United States Institutes of Peace [grant number aaaa].
It is not necessary to include detailed descriptions on the program or type of grants and awards. When funding is from a block grant or other resources available to a university, college, or other research institution, submit the name of the institute or organization that provided the funding.
If no funding has been provided for the research, please include the following sentence:
This research did not receive any specific grant from funding agencies in the public, commercial, or not-for-profit sectors.
Embedded math equations
If you are submitting an article prepared with Microsoft Word containing embedded math equations then please read this (related support information).
Artwork
Electronic artwork General points
• Make sure you use uniform lettering and sizing of your original artwork. • Embed the used fonts if the application provides that option.
• Aim to use the following fonts in your illustrations: Arial, Courier, Times New Roman, Symbol, or use fonts that look similar.
• Number the illustrations according to their sequence in the text. • Use a logical naming convention for your artwork files.
• Provide captions to illustrations separately.
• Size the illustrations close to the desired dimensions of the published version. • Submit each illustration as a separate file.
• Ensure that color images are accessible to all, including those with impaired color vision. A detailed guide on electronic artwork is available.
You are urged to visit this site; some excerpts from the detailed information are given here.
Formats
If your electronic artwork is created in a Microsoft Office application (Word, PowerPoint, Excel) then please supply 'as is' in the native document format.
Regardless of the application used other than Microsoft Office, when your electronic artwork is finalized, please 'Save as' or convert the images to one of the following formats (note the resolution requirements for line drawings, halftones, and line/halftone combinations given below):
EPS (or PDF): Vector drawings, embed all used fonts.
TIFF (or JPEG): Color or grayscale photographs (halftones), keep to a minimum of 300 dpi.