DNA sequence
Detection theory in identification of RNA-DNA sequence differences using RNA-sequencing.
... or sequence differences between RNA and DNA ...these sequence differences, researchers have reported the existence of all 12 types of RNA-DNA sequence differences (RDDs); however, the ...
12
DNA sequence explains seemingly disordered methylation levels in partially methylated domains of Mammalian genomes.
... surrounding sequence (centered around the CpG) and grouped all the CpGs based on that ...various sequence lengths ranging from 10 bp to a maximum of 140 ...a sequence context of 140 bp (with the CpG ...
10
Searching Most Likely DNA Sequence Using HMM
... given sequence data, ...the DNA and analyzing each of them ...unannotated DNA sequence directly, without making the preprocessing step of extracting all possible ...probable DNA ...
3
HLA DNA sequence variation among human populations: molecular signatures of demographic and selective events.
... studies, DNA sequence diversity among populations is also crucial to interpret the observed HLA ...2,062 DNA sequences defined for the different HLA alleles to analyze nucleotide diversity of seven ...
16
Determining physical constraints in transcriptional initiation complexes using DNA sequence analysis.
... combine DNA sequence analysis and genome-wide expression data to discern the constraints on the arrangement of binding sites for transcription factors involved in regulating the synthesis of ...
10
DNA Sequence Optimization Based on Continuous Particle Swarm Optimization for Reliable DNA Computing and DNA Nanotechnology
... computation, DNA computation research field has been initiated [1] . Usually, in DNA computing, the calculation process consists of several chemical reactions, where the successful wet lab experiment ...
9
Image correlation method for DNA sequence alignment.
... The main purpose of this work was to evaluate the performance of image correlation processes applied to DNA sequence alignment and to compare it to one of the most popular alignment alternatives, BLAST. The ...
11
Sequence to Medical Phenotypes: A Framework for Interpretation of Human Whole Genome DNA Sequence Data.
... of sequence variation data remains a formidable barrier to full realization of the promise of genomic medicine, whether it be applied for investigating the genetic basis for well-described disease phenotypes in ...
15
DNA-sequence variation among Schistosoma mekongi populations and related taxa; phylogeography and the current distribution of Asian schistosomiasis.
... genomic DNA was used as a template for PCR amplification on a Progene thermal cycler (MWG) employing standard PCR conditions ...manufacturers. DNA extracts were not Figure ...
10
DNA sequence analysis of plasmids from multidrug resistant Salmonella enterica serotype Heidelberg isolates.
... DNA sequencing of plasmids from five multidrug resistant S. enterica serovar Heidelberg isolates showed that each isolate studied had at least one smaller plasmid of less than 10 kb in size (all without ...
8
Breakage-reunion domain of Streptococcus pneumoniae topoisomerase IV: crystal structure of a gram-positive quinolone target.
... proposed DNA ‘‘bubble’’ mechanism ...attack DNA as a natural consequence of G-segment recognition and binding by the a3/a4 helices and by the 100-122 ...the DNA-binding groove of ...known DNA ...
9
The conservation of mitochondrial genome sequence in Leucadendron (Proteaceae)
... Leucadendron is a genus which is much younger than other genera in Proteaceae. Using molecular dating, it was reported that Leucadendron evolved 40 millions year ago. (Barker et al. 2007). Actinidia is dated even ...
6
Distinctively variable sequence-based nuclear DNA markers for multilocus phylogeography of the soybean- and rice-infecting fungal pathogen Rhizoctonia solani AG-1 IA
... nuclear DNA sequence-based markers suitable for studies of phylogeography of the rice- and soybean infect- ing fungus ...genomic DNA fragments previously used as RFLP probes (Rosewich et ...
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Genetic Algorithm Based Approach for Obtaining Alignment of Multiple Sequences
... In order to examine our algorithm validity, we test number of series with DNA sequence. Firstly the algorithm is executed 100 run on GA while number of generation become fix and size of population is to be ...
6
Morphological changes of Paulownia seedlings infected phytoplasmas reveal the genes associated with witches' broom through AFLP and MSAP.
... on DNA sequence and to discover the genes related to PaWB occurrence, DNA polymorphisms and DNA methylation levels and patterns in PaWB seedlings, the ones treated with various concentration ...
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Revisão e análise filogenética do gênero Glenognatha Simon, 1887 (Araneae, Tetra...
... Phylogenetic relationships of the spider family Tetragnathidae (Araneae, Araneoidea) based on morphological and DNA sequence data.. Morphological and phylogenetic atlas of the orb-wea[r] ...
23
Coalescent-based species delimitation approach uncovers high cryptic diversity in the cosmopolitan lichen-forming fungal genus Protoparmelia (Lecanorales, Ascomycota).
... evolutionary independent, whereas BP&P suggested them to be a single species. Recent studies indicated that spedeSTEM may be less accurate than other species delimitation methods in cases of recent speciation events ...
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Molecular Epidemiology of Human Polyomavirus JC in the Biaka Pygmies and Bantu of Central Africa
... on sequence analysis of JCV complete genomes or fragments thereof, JCV can be classified into geographically derived ...viruria. DNA sequence analysis revealed JCV Type 3 (two), Type 6 (two) and one ...
10
Sequence analysis of the ribosomal DNA ITS2 region in two Trichogramma species (Hymenoptera: Trichogrammatidae)
... he DNA sequence variation from the internal tran- scribed spacer 2 (ITS2) region of nuclear ribosomal DNA (rDNA) was analyzed from these two Trichogramma ...
6
The complete mitochondrial genome of Corydoras nattereri (Callichthyidae: Corydoradinae)
... circular DNA sequence of 16,557 nucleotides encoding 22 tRNA genes, two rRNA genes, 13 protein-coding genes and two noncoding control regions (D-loop, ...de DNA de próxima ...de DNA circular ...
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