h tt p : / / w w w . b j m i c r o b i o l . c o m . b r /
Environmental
Microbiology
Variations
in
culturable
bacterial
communities
and
biochemical
properties
in
the
foreland
of
the
retreating
Tianshan
No.
1
glacier
Xiukun
Wu
a,b,
Gaosen
Zhang
a,b,
Wei
Zhang
a,b,
Guangxiu
Liu
a,b,∗,
Tuo
Chen
b,c,
Yun
Wang
a,b,
Haozhi
Long
a,
Xisheng
Tai
a,
Baogui
Zhang
a,b,
Zhongqin
Li
caChineseAcademyofSciences,NorthwestInstituteofEco-EnvironmentandResources,KeyLaboratoryofDesertandDesertification,
Lanzhou,China
bKeyLaboratoryofExtremeEnvironmentalMicrobialResourcesandEngineering,Lanzhou,GansuProvince,China
cChineseAcademyofSciences,NorthwestInstituteofEco-EnvironmentandResources,StateKeyLaboratoryofCryosphericSciences,
Lanzhou,China
a
r
t
i
c
l
e
i
n
f
o
Articlehistory:Received4June2015 Accepted24October2016 Availableonline15February2018 AssociateEditor:IêdadeCarvalho Mendes
Keywords:
TianshanNo.1glacier Foreland
Culturablebacteria
Soilbiochemicalcharacteristics
a
b
s
t
r
a
c
t
Asaglacierretreats,barrenareasareexposed,andthesebarrenareasareidealsitestostudy microbialsuccession.Inthisstudy,wecharacterizedthesoilculturablebacterial commu-nitiesandbiochemicalparametersofearlysuccessionalsoilsfromarecedingglacierin theTianshanMountains.Thetotalnumberofculturablebacteriarangedfrom2.19×105to
1.30×106CFUg−1dwandfrom9.33×105to2.53×106CFUg−1dwat4◦Cand25◦C,
respec-tively.Thenumberofculturablebacteriainthesoilincreasedat25◦Cbutdecreasedat4◦C alongthechronosequence.Thetotalorganiccarbon,totalnitrogencontent,andenzymatic activitywererelativelylowintheglacierforeland.Thenumberofculturablebacteria iso-latedat25◦CwassignificantlypositivelycorrelatedwiththeTOCandTNaswellasthe soilurease,protease,polyphenoloxidase,sucrase,catalase,anddehydrogenaseactivities. Weobtained358isolatesfromtheglacierforelandsoilsthatclusteredinto35groupsusing amplifiedribosomalDNArestrictionanalysis.Thesegroupsareaffiliatedwith20generathat belongtosixtaxa,namely,Alphaproteobacteria,Betaproteobacteria,Gammaproteobacteria, Actinobacteria,Bacteroides,andDeinococcus-Thermus,withapredominanceofmembers ofActinobacteriaandProteobacteriainallofthesamples.Aredundancyanalysisshowed thatthebacterialsuccessionwasdividedintothreeperiods,anearlystage(10a),a mid-dlestage(25–74a),andalatestage(100–130a),withthetotalnumberofculturablebacteria mainlybeingaffectedbythesoilenzymaticactivity,suggestingthatthemicrobialsuccession correlatedwiththesoilagealongtheforeland.
©2018PublishedbyElsevierEditoraLtda.onbehalfofSociedadeBrasileirade Microbiologia.ThisisanopenaccessarticleundertheCCBY-NC-NDlicense(http://
creativecommons.org/licenses/by-nc-nd/4.0/).
∗ Correspondingauthorat:KeyLaboratoryofDesertandDesertification,NorthwestInstituteofEco-EnvironmentandResources,Chinese
AcademyofSciences,DonggangWestRoadNo.320,Lanzhou730000,China. E-mail:liugx@lzb.ac.cn(G.Liu).
https://doi.org/10.1016/j.bjm.2018.01.001
1517-8382/©2018PublishedbyElsevierEditoraLtda.onbehalfofSociedadeBrasileiradeMicrobiologia.Thisisanopenaccessarticle undertheCCBY-NC-NDlicense(http://creativecommons.org/licenses/by-nc-nd/4.0/).
Introduction
Over the past 100 years, the average global tempera-ture has increased by 0.74◦C,1 and one consequence of
this temperature increase is that glaciers are retreating in many mountainous areas of the world. As the glaciers retreat, the newly exposed land is a new habitat for microorganisms2 derived from the air, clouds, snow, rain,
and runoff waters from the glacier body in addition to autochthonousmicroorganisms.3Bacterialcommunitiesmay
bekeydeterminantsofglacierforelandecosystemstability andfunctionbecauseoftheirimportantroles insoil devel-opment,biogeochemicalcyclesandheterotrophicactivities. Microbialcommunitieschangealongthesoilagegradientofa glacialforeland.Sigleretal.4foundthatthenumberof
dom-inant organism typesand community evenness decreased withsuccession,butothersfoundthatthephylotypenumber, diversity,andevennessincreasedovertime.2,5However,most
ofthosestudiesarefocusedonPolarandEuropeanmountain areas;therefore,studiesonthebacterialcommunity,soil bio-chemicalpropertiesandthecorrelationbetweenbacteriaand soilbiochemicalproperties along chronosequences insuch highAsianregionsastheTianshanMountainsarestillneeded. The Tianshan No. 1 glacier is located in the Eastern TianshanMountainsofCentralAsia,mountainsthatare sur-rounded by desert.6 Theclimate in this area isa classical
continentalclimate,andwindisanimportantclimatic fac-torintheupperelevationsofthemountains.7TheTianshan
No.1glacierhasbeenstudiedintensivelyfromaglaciological pointofviewsince1959,8–10 whentheTianshan
Glaciologi-calStationwasbuilt.Becauseoftheavailabilityofextensive glaciologicaldataanddetailedglacierretreatdata,thisarea is anideal location for the study of microbial distribution andgrowthrelatedtobothclimaticandother environmen-talfactors.11,12Althoughthestudyofmicroorganismsinthis
area is very important, few studies have been performed. Baietal.13 reportedthebacterialdiversityfrompermafrost
in the Tianshan Mountains, and Yang et al.14 studied the
permafrostbacterialand archaealcommunitystructuresin thesamearea.Shenget al.15 firstdescribedtheindigenous endophyticbacteriawithinsubnivalplantsofthe Tianshan Mountains.Wangetal.16reportedmicrobialbiomassandsoil
enzymeactivity variationsalongchronosequences,andWu etal.11usedpyrosequencingtoanalyzethebacterialdiversity
alongchronosequences.However,studiesregardingthe varia-tionoftheculturablebacterialcommunitiesandbiochemical characteristicsalongchronosequencesintheTianshan Moun-tainsarenotavailable,andthusfundamentalknowledgeon theculturablebacterialcommunitiesandbiochemical charac-teristicsintheTianshanNo.1glacierforelandsislacking.
Inthisstudy,wepresentdataregardingthesoil biochem-icalpropertiesanddiverse bacteriaculturedusing samples fromtheTianshanNo.1glacierforelands.Theresultscould leadtoabetterunderstandingoftheinitialcolonizationand successionpatternsofmicroorganismsandsoildevelopment and the correlation between bacteria and soilbiochemical propertiesalongchronosequencesinahighAsianregion.Our aimswere(1)toinvestigatethesoilbiochemicalpropertiesand culturablebacterialabundancevariationsalonga
chronose-1-34-7 8-11 12-16 17-21 22-25 1760 1675 1911 1962 Sample location Moraine
Fig.1–Mapofsamplingposition.
quence,(2)todeterminetheculturablebacterialcommunity variationsbyusingalow-nutrientmediumculturedat4◦C and 25◦C,and (3)toexaminethecorrelations betweenthe abundance of culturable bacteria and the soil biochemical propertieswithincreasingsoilage.
Materials
and
methods
Studysiteandsampling
TheTianshanMountainsextendthroughChina,Kyrgyzstan andKazakhstaninCentralAsiaandhave15,953glacierswith atotalareaof15,416km2.17Thesamplesiteswerelocatedat
TianshanNo.1glacier(N43◦06,E86◦48),120kmsouthwest ofUrumchi,China(Fig.1).Thetopelevationatthisglacieris 4486m.Thesampleswerecollectedattheeastbranchof Tian-shanNo.1glacierforelandalongthechronosequenceinfront oftheretreatingglaciers.Twenty-fivesoilsampleswere col-lectedinAugust2010.Thesesoilsamplesrepresent6periods: sites1to3,sites4to7,sites8to11,sites12to16,sites17to21, andsites22to25represent10a,25a,60a,74a,100a,and130a, respectively.Thesuccessiontimeofeverysamplingsitewas determinedusingtheannualglacierretreatobservationdata (from1959to2010) fromtheTianshanGlaciologicalStation (Chinese AcademyofSciences) and lichenometric chronol-ogy data(from 1958to1538).18 Each soilsampleconsisted
ofthree subsamplecores ata5cmdepth collected at ran-dominanareaapproximately 2m×2m;the sampleswere mixedafterthelargergravelhadbeenremoved.Pioneerplants appeared in the deglaciated soil within 10–100 years, and vegetationdevelopedafter100yearsofdeglaciation. Succes-sionalspeciesarrivingwithin10–100yearsincludedCancrinia tianschanica, Bryophytaspp., Poa tianshanica, Draba nemorosa, SaxifragahirculusL.,Melandriumapricum,Leontopodium lentopo-dioides,Saussureagnaphalodes,Crepisflexuosa,Rhodiolacoccinea, Oxyriadigyna,andSaussureainvolucrata,whereasSenecio thian-schanicus,Polygonumviviparum,andPedicularisspp.additionally appearedoutsidetheglacierforeland.Thesoilsampleswere placedinasterilesoilboxandkeptoniceduringtransportto thelaboratoryandthenanalyzedimmediately.
Biochemicalanalysesofthesoils
Thesoilwatercontentwasmeasuredbyaweightlossmethod after48hat80◦Cinadryingoven.ThesoilpHofsoil: double-distilledwater(1:1w/v)wasmeasuredusinganaciditymeter (SartoriusPT-10,Germany).19Afterair-dryingandgrindingto
allowpassagethrougha100meshsieve,thesoilorganicCand totalNweredeterminedusinganelementalanalyzer (Elemen-tarVario-EL,Germany).
All of the enzymatic preparations were performed at 0–4◦C.Thesoilenzymesurease,sucrase,protease, polyphe-nol oxidase, catalase, and dehydrogenase were measured. Theactivityofureasewasmeasuredaccordingtoamodified methoddescribedbyTayloretal.,20andtheureaseactivitywas
expressedas1mgammonia-N/gdryweight(dw)soilper24h. Thedehydrogenaseactivitywasdeterminedbythereduction of2-p-iodo-nitrophenyl-phenyltetrazoliumchloride (INT) to iodo-nitrophenylformazan(INTF)usingthemethodof Tay-loretal.,20andtheactivitywasexpressedas1gINTF/gdw
soilper24h.Thecatalaseactivitywasdeterminedby measur-ingtheO2absorbedbyKMnO4aftertheadditionofH2O2to
thereactionmixture.21 Theproteaseactivitywasmeasured
accordingtoNannipieri etal.22 and Garcıa-Gil et al.,21 and
theactivitywasexpressedas1mgN/gdwsoilper24h.The sucraseactivitywasdeterminedaccordingtothemethodby Schinner,23andtheactivitywasexpressedas1mgglucose/g
dwsoilper24h.Thepolyphenoloxidaseactivitywas mea-suredaccordingtoSaiya-Corket al.,24 andthe activitywas
expressedas1mgpyrogallol/gdwsoilper24h. Bacterialisolationandcultivation
Becauseacultivationstrategyusinganutrient-richmedium isratherselective,favoringfast-overslow-growingbacterial species,25alow-nutrientmedium,PYGV(DSMZmedium621,
http://www.dsmz.de),was usedtoisolatethe bacteria. The
bacterialcultivationandisolationwereperformedaccording tothemethodofZhangetal.19Soilsamples(5g)wereplaced
ina250mLflaskcontaining45mLofautoclaved0.85%NaCl solutionwithglassbeadsandshakenat150rpmat4◦Cfor 30min.Afterthistreatment,1mLofsuspendedcellandsoil particlesubsamplesweredilutedfrom 10-foldto10−4 with autoclaved0.85%NaClsolution.A100Laliquotofthe dilu-tionwasplatedonPYGVmediumandincubatedat25◦Cfor oneweekor4◦Cforthreeweeks.Theinoculationprocedure waspreparedintriplicateforeachdilution.Asterilizedsoil samplethathadbeenautoclaved(121◦Cfor2h)wasusedasa negativecontrol.Subsequently,thecolonyformingunits(CFU) werecalculatedastheaveragesofthetriplicateplates.Distinct coloniesontheplateswererestreakedontoPYGVagarplates andthenimmediatelypreservedat−70◦Cinliquidmedium
with15%glycerol.
AmplifiedribosomalDNArestrictionanalysis(ARDRA)
ARDRA was used to group the 358 isolates. The genomic DNA was extracted and purified using an AxyPrep Bacte-rialGenomic MiniprepKit (AXYGEN,USA)accordingtothe manufacturer’sinstructions.Approximately20ngofDNAwas amplified with 27F (5-AGAGTTTGATCCTGGCTCAG-3) and
1492R(5-GGTTACCTTGTTACGACTT-3),asdescribedbyZhang etal.,19inatotalvolumeof50L.Thereactioncontained2
unitsofTaqDNApolymerase(Fermentas),1×TaqBuffer,3mM MgCl2,0.2mMdNTP,and0.4Meachprimer.Afteraninitial
stepat94◦Cfor3min,30cyclesof94◦Cfor1min,58◦Cfor 1min,and72◦Cfor1.5minwereperformed,withaterminal 10minextensionat72◦C.
A10LaliquotofthePCRproductswasdoubledigested withrestrictionenzymesHaeIIIandAluI(MBIFermentas)by 1.5Uofeachrestrictionenzymeand1Lof10×TangoBuffer at37◦Cfor16h. Theenzymes were inactivatedbyheating thepreparationsat65◦Cfor20min,andtheproductswere separated using2.5%agarosegel(wt/vol)electrophoresisin TAEbuffercontaining0.5g/mLofethidiumbromide.A50bp ladderwasusedasamarker.
Sequenceandphylogeneticanalysis
Based on the amplified ribosomal DNA restriction
analysis (ARDRA) of the isolates, one representa-tive strain of each group was selected for sequence determination of the 16S rRNA gene. Three univer-sal primers, 27F (5-AGAGTTTGATCCTGGCTCAG-3), 517F (5-CCAGCAGCCGCGGTAAT-3), and 907F (5
-AAACTCAAATGAATTGACGGG-3), were utilized for
sequencing.19
The16SrRNAgenesequenceclassificationswere identi-fiedusingthe16SrRNAtrainingset 16referencedatabases withtheRDPClassifiermethod(http://rdp.cme.msu.edu/)and aligned against representative reference sequences of the mostclosely relatedmembersobtainedfrom the16S rRNA database inNCBI. CLUSTALW1.81 software wasthen used to perform the multiple alignment26 using the method of
Jukes and Cantor to calculate the evolutionary distances. Thephylogenetic dendrograms were constructedusing the neighbor-joiningmethod,27andthetreetopologieswere
eval-uatedbyperformingbootstrapanalysisof1000datasetsusing theMEGA4.1package.28
Dataanalysis
Thecorrelationcoefficients(R)andtheirpvalueswere cal-culated bythe Pearson methodusing SPSS 13.0 (SPSSInc., Chicago,IL, USA). Thesignificancelevels were within con-fidence limits of 0.05 or less. The data presented are the means ofat least threeindependent experiments and are expressedasthemean±SE.Comparisonsbetweenthemean valueswereperformedusingtheleastsignificantdifference (LSDtest)atp<0.05.Thenumber ofeach differenttypeof colonyappearingontheplateswascountedwhentheCFU werecalculated.CombiningtheARDRAandsequence anal-ysisresults,thebacterialtaxaabundancesweredetermined. Theanalysisofculturablebacterialtaxaabundancecombined withtheenvironmentparameters,suchaspH,C,N,andsoil enzymeactivity,wasperformedusingCANOCO(version4.5, MicrocomputerPower,Ithaca,NY,USA).Aninitialdetrended correspondence analysis (DCA) ofculturable bacterial taxa abundancerevealedthatthedataexhibitedalinear(Lengths ofgradient<3), ratherthan aunimodal,trend, which indi-catedthatredundancyanalysis(RDA)shouldbeused.29The
Table1–Thenumberofculturablebacteriaandsoilbiochemicalparametersofthesuccessionalsitesalongthe chronosequences.
Samples Soilageafter
deglaciation(years)
4C 25C pH OrganicC(%dw) TotalN(%dw) C/Nratio(w/w)
1–3 10a 13.05±11.66a 9.33±0.44b 8.41±0.084a 0.438±0.018a 0.047±0.005a 9.60±1.03b
4–7 25a 8.39±3.61a 12.39±0.54ab 7.69±0.046bc 0.503±0.092a 0.055±0.010a 9.11±0.11b
8–11 60a 2.43±0.92a 14.86±0.41ab 7.86±0.034b 0.523±0.040a 0.040±0.005a 13.45±1.31a
12–16 74a 3.21±0.85a 15.44±0.25ab 7.54±0.039bcd 0.809±0.190a 0.068±0.016a 12.07.±0.85ab
17–21 100a 2.19±1.15a 17.46±0.59ab 7.20±0.052d 0.751±0.197a 0.062±0.012a 12.02±1.42ab
22–25 130a 4.57±0.53a 25.32±0.38a 7.32±0.060cd 1.600±0.110a 0.127±0.089a 13.30±1.22a
Resultsaregivenasthemeans±SE.Differentsuffixlettersindicatevaluesthataresignificantlydifferentfromoneanother(ANOVA,p<0.05). 4Cand25Cdenotethenumberofculturablebacteriaat4◦Cand25◦C(×105),respectively.
differentagedsoilswereclusteredbyusingthehierarchical clustermethod(SPSS13.0).
Nucleotidesequenceaccessionnumbers
The16S rRNAgenesequencesofthe35representative
iso-latedstrainsweredepositedinGenBank.Thesequencesfrom thebacteriallibraries wereassigned toaccessionnumbers: JN662509-JN662543.
Results
Theabundanceofculturablebacteriainthesoils
The total number of the culturable bacteria ranged from
2.19×105 to 1.30×106CFUg−1dw and from 9.33×105 to 2.53×106CFUg−1dwat4◦Cand25◦C,respectively.Thetotal numberofculturablebacteriaisolatedat4◦Cdecreasedalong thechronosequence,butnotsignificantly(p=0.09),whereas thenumberofbacteriaisolatedat25◦Csignificantlyincreased alongthechronosequence(p=0.003).Thenumberof cultur-ablebacteriainthe10asoilisolateat4◦Cwas1.4timesthatat 25◦C;atlaterages,thenumberisolatedat4◦Cwaslowerthan at25◦C.Atthe130aage,thenumberisolatedat25◦Cwas5.5 timesthatisolatedat4◦C(Table1).
Biochemicalpropertiesofthesoils
ThesoilpHvaluesdecreasedsignificantly(p=0.04)from8.41 to7.32withthechronosequence.ThesoilorganicCandtotal Ncontentwereverylowatallagesoftheretreatingglacier, ranging from0.438% to1.600%and from0.040% to0.127%, respectively.ThesoilorganicCsignificantlyincreased(p=0.03) alongthechronosequence,andthesoiltotalNalsoincreased alongthechronosequence,butnotsignificantly(p=0.07).The soilC/Nratioshowedanincreasingtrendwiththesoilage (p=0.06).
Soilenzymeactivitiesintegrateinformationabout micro-bial status and soil physicochemical conditions30 and are
often used as an indicator of the functioning of soil ecosystems.31Thesoilenzymeactivitysignificantlyincreased
along the soil age gradient, including catalase, dehydro-genase, polyphenoloxidase, protease, sucrase and urease (p=0.015, 0.004, 0.017, 0.045, 0.027, and 0.023, respectively)
(Tables1and2).
ARDRAandphylogeneticanalyses
Using ARDRA, all 358 isolates cultured at 25◦C and 4◦C wereclusteredinto35groups.Aftercomparingthe16SrRNA sequence of a representative strain from each group, the recoveredbacteriaclusteredintosixgroups: Alphaproteobac-teria, Betaproteobacteria,Gammaproteobacteria, Actinobac-teria,Bacteroides,andDeinococcus-Thermus(Fig.2).
Table2–Thechangesinenzymeactivitiesinthesoilsofthesuccessionalsitesalongthechronosequences.
Samples Soilenzyme
activity Catalase(mg N/gsoilh) Dehydrogenase (gINTF/g soil24h) Polyphenoloxidase (mgpyrogallol/gsoil 24h) Protease(mg N/gsoil24h) Sucrase(mg glucose/gsoil 24h) Urease(mg N/gsoil24h) 1–3 2.07±0.108b 36.8±7.08cd 0.403±0.058c 0.233±0.035a 1.04±0.138bc 0.191±0.036b 4–7 1.88±0.501b 30.2±1.25d 0.558±0.045b 0.305±0.046a 0.786±0.187c 0.252±0.029ab 8–11 2.73±0.615b 42.8±1.37bc 0.546± ±0.059b 0.233±0.042a 1.76±0.150bc 0.283±0.019ab
12–16 2.92±0.274b 43.1±4.03bc 0.589±0.027b 0.346±0.030a 2.24±0.659ab 0.319±0.020ab
17–21 2.82±0.457b 51.5±5.82ab 0.598±0.031b 0.355±0.074a 1.57±0.513bc 0.273±0.022ab
22–25 4.71±0.320a 59.3±2.25a 0.815±0.068a 0.405±0.068a 3.26±0.299a 0.374±0.100a
Actinobacteria Deinococcus-thermus Gammaproteobacteria Betaproteobacteria Alphaproteobacteria Bacteroidetes alpine soil 0.02
Permafrost in Qinghai-Tibet Platuea Subnival plants in Tianshan Mountains
Arctic lichen sterocaulon ZhaDang Snow Pit glacier foreland Paddy Field Soil Arctic rhizosphere Arctic
Antarctica snow
Snowpack from the Tibetan Plateau Indian cold deserts high Arctic glacier Suraj Tal Lake Chandra Tal Lake
glacier foreland Friesland farmland soil Antarctica Sor Rondane Mountains
Qinghai-Tibet Plateau Origin 98 B1.7 (JN662533.1) Arthrobacter sp. c138 (AB167248.1) Arthrobacter sp. R-39621 (FR691392.1) Arthrobacter sp. RKS6-4 (GQ477171.1) Arthrobacter sp. Asd M3-2 (FM955860.1) Arthrobacter sp. V12 (JF313090.1) Arthrobacter sp. JSPB6 (JQ308619.1) Arthrobacter sp. JHBB9940 (KR085877.1) Arthrobacter sp. R-43110 (FR691390.1) Phycicocus sp. s23430 (D84624.2) Cryobacterium sp. hp36 (JN637331.1) Leifsonia sp. ZD5-4 (JKJ095109.1) Agresia sp. Enf63 (DQ33957.1) Microbacterium sp. R-36360 (FR682685.1) Microbacterium sp. IHBB 11136(KR085857.1) Microbacterium sp. 28 (KF923438.1) Deinococus sp. R-36590 (FR682759.1) Lysobacter sp. 3.2.11 (FR600120.1) Pseudoxanthomonas sp. C2603 (JX097007.1) Pseudomonas sp. IHBB 11130 (KR085942.1) Pseudomonas sp. PSAA4(4) (DQ628969.1) Sphingomonas sp. MSCB-3 (EF103200.1) Sphingomonas sp. Asd M4-14 (FM955867.1) Aurantimonas sp. R-36516 (FM682697.1) Rhizobium sp. MN6-12 (JQ396566.1) Bosea sp. GR060219 (EU448290.1)
Bradyrhizobium sp. S32010-a (AB64899.1)
Brevundimonas sp. TMT2-42-1 (JX950098.1) Brevundimonas sp. TP-snow-C31 (JHQ327140.1) Chryseobacterium sp. BBCT4 (DQ337556.1) Muciladinibacter sp. PAMC 26640 (JX847597.1) Pedobacter sp. Axs12 (JQ977410.1) Pedobacter sp. HRB3 (GQ294578.1) Pedobacter sp. S8-2 (GQ294578.1) Sphingomonas sp. TP-snow-C72 (KC987002.1) Janthinobacterium sp. IARI-R-50 (JX429043.1) A3.2 (JN662514.1) A1.2 (JN662510.1) B10.6 (JN662538.1) A4.3 (JN662516.1) A5.1 (JN662517.1) B10.3 (JN662537.1) B6.3 (JN662535.1) A2.2 (JN6625137.1) A6.3 (JN662519.1) A15.2 (JN662524.1) A9.2 (JN662520.1) A15.4 (JN662525.1) A12.2 (JN662522.1) A5.3 (JN662518.1) A23.3 (JN662530.1) A20.4 (JN662527.1) A1.4 (JN662512.1) A1.1 (JN662509.1) B1.2 (JN662532.1) B18.6 (JN662541.1) A21.1 (JN662528.1) A3.4 (JN662515.1) B16.14 (JN662539.1) A12.1 (JN662521.1) A27.4 (JN662531.1) A22.1 (JN662529.1) A1.3 (JN662511.1) A16.2 (JN662526.1) A12.4 (JN662523.1) B20.9 (JN662542.1) B17.2 (JN662540.1) B8.2 (JN662536.1) B5.3 (JN662534.1) B26.7 (JN66253.1) 57 44 49 98 65 96 51 57 57 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 100 99 54 51 98 94 94 100 100 67 47 100 100 100 100 96 99 99 99 96 89 99 98 62 51 52 Antarctica
Antarctica Sor Rondane Mountains alpine subnival plants Dongkemadi glacier forefield
Zhadang Glacier snow pit Antarctica
Roopkund Glacier in Himalayas Arctic glacier
Arctic permafrost
Suraj Tal Lake
Fig.2–Phylogeneticdendrogrambasedonacomparisonofthe16SrRNAgenesequencesofthebacterialisolatesfromthe TianshanNo.1glacierforelandandsomeoftheirclosestphylogeneticrelatives.Thenumbersonthetreeindicatethe percentagesofbootstrapsamplingderivedfrom1000replications.Theisolationsourcecolumnliststheenvironmentsfrom whichtheclosestphylogeneticrelativescome.
The 35 studied isolates belonged to the following 20 genera: Agreia,Arthrobacter,Aurantimonas, Bosea, Bradyrhizo-bium,Brevundimonas,Chryseobacterium,Cryobacterium, Deinococ-cus, Janthinobacterium, Leifsonia, Lysobacter, Microbacterium, Mucilaginibacter,Pedobacter,Phycicoccus,Pseudomonas, Pseudox-anthomonas, Rhizobium, and Sphingomonas. A total of eight isolatesbelongedtoArthrobacter,andthreeisolatesbelonged eachtoMicrobacterium,Pedobacter,andSphingomonas. Brevundi-monasandPseudomonaseachhadtwoisolates,andtheother
generawererepresentedbyoneisolateeach.Asrevealedby thephylogenetictreeconstruction,thesebacteriawereclosely relatedtoothercold-environmentbacteria(Fig.2).
Actinobacteriawasthe dominanttaxonforthesamples incubated at 4◦C, and the abundance remained constant along the chronosequence, whereas the abundance of Alphaproteobacteria and Bacteroides were relatively lower than Actinobacteria. The Deinococcus-Thermus group was only found in the 100a soil, and Betaproteobacteria and
100 80 60 40 20 0 100 80 60 40 20 0
10a 25a 60a
Years since glacier retreat
Years since glacier retreat
74a 100a 130a
10a 25a 60a 74a 100a 130a
Relativ e a vundance ph ylum (%) Relativ e a vundance ph ylum (%)
a
b
Deinococcus-thermus Bacteroides Alphaproteobacteria Actinobacteria Bacteriodes Actinobacteria Gammaproteobacteria Betaproteobacteria AlphaproteobacteriaFig.3–Variationsofthetaxaabundancesoftheculturablebacteriainsoilsamplesalongthechronosequences((a) incubatedat4◦C,(b)incubatedat25◦C).
Gammaproteobacteriawerenotfoundinallofthesamples (Fig.3a).However,thespeciesrichness at25◦C washigher thanat4◦C,includingActinobacteria,Bacteroides,and Alpha-, Beta- and Gammaproteobacteria.The Actinobacteria and Proteobacteriawerethedominanttaxainthesoilscultured at25◦C,withtheabundanceofProteobacteria significantly decreasingalongthechronosequence(p=0.02)andthe abun-dance of Actinobacteria significantly increasing along the chronosequence(p=0.01).TheabundanceofBacteroideswas relativelystableinallofthesoilsamples.The Betaproteobac-teriawereonlyfoundintheoldestsoils,andtheabundance wasverylowcomparedtotheothertaxa(Fig.3b).
Thecorrelationsbetweentheabundanceofsoilculturable bacteriaandsoilbiochemicalparameters
The total number of culturable bacteria in the soils cul-tured at25◦C were significantly positively correlated with the soiltotalN(p<0.05),organic C (p<0.01), and soil cata-lase (p<0.01), dehydrogenase (p<0.05), polyphenoloxidase (p<0.01), protease (p<0.05), sucrase (p<0.05), and urease (p<0.05) activities. The soilpH value negatively correlated withthenumberofculturablebacteriabutwasnotsignificant. Thisresultindicatedthatthebacterialabundanceincreased with increasing soil N and organic C and increasing soil
enzymeactivitiesandwithdecreasingsoilpHvaluesalong thesoilagegradient(Table3).RDAaxes1and2werefoundto explain91.5%and7.2%,respectively,oftheoverallvariance, withthebacterialabundanceanddiversitydatacorrelating withtheenvironmentaldata.Thenumberofculturable bac-teriahadapositiverelationshipwiththesoilenzymeactivity, whichwasingoodagreementwiththeSPSScorrelation anal-ysis.Inaddition,thebacterialcommunitiesofthe 10asoils and100–130asoilswereseparatedfrom25–74a,indicatingthat thebacterialsuccessionintheTianshanNo.1glacierforeland shouldbedividedintothreestages:anearlystage(10a),a mid-dlestage(25–74a)andalatestage(100–130a)(Fig.4).Thisresult isconsistentwiththeclusteranalysisresults(Fig.5).
Discussion
ThesoilorganicC,totalNand enzymeactivitiesincreased along the exposure time gradient, while the soil pH decreased in the foreland of Tianshan No. 1 glacier. Sim-ilar results were reported at Dongkemadi glacier and Damma glacier.32,33 The total number of culturable
bac-teria recovered from the Tianshan No. 1 glacier foreland was higher than that of the permafrost in the same area (2.5–6.0×105CFUg−1)13butsimilartothenumberrecovered
Table3–Thecorrelationsbetweenthenumbersofculturablebacteriaat25◦Candthesoilbiochemicalparametersalong
thechronosequences.
pH TotalN OrganicC Protease Polyphenoloxidase Catalase Urease Dehydrogenase Sucrase
25C −0.769 0.889b 0.947a 0.820b 0.972a 0.956a 0.914b 0.900b 0.895b pH −0.571 −0.620 −0.864b −0.794 −0.579 −0.746 −0.646b −0.537 TotalN 0.983a 0.845b 0.901b 0.907b 0.802 0.754 0.842b OrganicC 0.834b 0.933a 0.967a 0.869b 0.845b 0.917b Protease 0.859b 0.724 0.779 0.688 0.681 Polyphenoloxidase 0.900b 0.937a 0.776 0.845b Catalase 0.884b 0.913b 0.969b Urease 0.734 0.914b Dehydrogenase 0.861b
25Cdenotesthenumberofculturablebacteriaat25◦C.
a Thecorrelationissignificantatthe0.01level. b Thecorrelationissignificantat0.05(2-tailed).
100a PR PO CFU N UR C DE 74a 10a 60a pH 130a SU CA Actin Bact 25a prot -1.0 -1.0 1.0 1.0
Fig.4–RDAbiplotofthecorrelationbetweenthetaxa abundanceofbacteriaculturedat25◦Candsoil
biochemicalparameters.Thetaxaabundanceofbacteria culturedat25◦C(seeFig.3b);soilbiochemicalparameters (seeTable2).Dashlinearrowsindicatetheenvironmental variables(N,TN(%);C,OC(%);UR,urease;DE,
dehydrogenase;SU,sucrase;CA,catalase;PO,polyphenol oxidase,PR,protease).Solidlinearrowsindicatethe abundanceofbacteria(Bact,bacteroides(%);Prot, proteobacteria(%);Actin,actinobacteria(%)).
Rescaled distance CA S E Label Num 0 100a 130a 25a 60a 74a 10a 5 10 15 20 25
Fig.5–Hierarchicalclusteranalysisofculturablebacterial abundanceandcommunitiesinsoilsofdifferentages.
fromtheDongkemadiglacierforelandintheCentralTanggula Mountains(1.29×105–2.54×106CFUg−1).32ThesoilorganicC
andtotalNhavepositiverelationshipswiththesoilenzyme
activities and microbial abundance in the Tianshan No. 1 glacier foreland. Zumsteg et al.33 had findings similar to
ours,reportingthatthemicrobialcommunitystructureand enzymatic activitypatterns arestronglyconditionedbythe successional stage in addition tothe C and Ncontents of theglacierforelandsoils.Furthermore,theincubation tem-peratures alsoaffected theabundance anddiversity ofthe bacteria.ThisfindingisinaccordancewiththeLapanjeetal.25
studyattheDammaglacierandLiuetal.32attheDongkemadi
glacier.Thereasonforthedifferencemaybethat,although theywerenotthedominantbacteriaattheearlyage(10a), psychrotolerant bacteriabecome dominantwithincreasing soilage.34
Thebacterialtaxaanddominantphylaisolatedfromthe TianshanNo.1glacierforelandweresimilartothe Qinghai-Tibet PlateauJadang glacierforeland,35 Dongkemadiglacier
foreland in the Central Tanggula Mountains,32 Himalayan
Pindariglacier foreland,36 high Articpermafrost soil,37 and
Antarcticpermafrost soil.38 Thisresultindicatedthat
simi-larcoldenvironmentsaccommodatesimilarmicrobes,which couldbeevidencetosupportthe“environmentselect”theory. SomeofthebacterialisolatesfromtheTianshanNo.1glacier forelandmayoriginatefromtheglacierandglaciersediment, whileothersmayderivefromtheatmosphericdustfromother environments.39ThebacterialisolatesfromTianshanNo.1
glacier foreland belong to sixphyla. Bai et al.13 examined
thephylogeneticdiversityofbacteriafrompermafrostinthe TianshanMountainsusingaculture-dependentmethodand found 4 phyla: Actinobacteria, Bacteroides, Firmicutes and Proteobacteria. Yang et al.14 studiedthe permafrost
bacte-rial communitystructuresanddiversityusingadenaturing gradientgelelectrophoresismethodandfound7phylaof bac-teria, including the Acidobacteria,Gemmatimonadetes and ChloroflexiphylawhichwerenotfoundbyBaietal.13
Com-paredwiththepreviousreportsinthisstudyarea,thepresent study isthe firstto recoverbacterialstrains fromthe phy-lum Deinococcus-Thermus. Deinococcus-Thermus consists mainlyofthermophiles,40andfindingDeinococcus-Thermus
inthiscoldandhigherUVexposureenvironmentis interest-ingand shouldbefurtherstudiedforitscold-adaptionand UV-resistancemechanisms.
The dominate actinobacteria isolates in this study belonged to the genus Arthrobacter, which was the most
highlydiversegroupamongourisolatesandaretypicallythe predominantgenus incold environments.19,25,32,37,38,41
Pro-teobacteriaareafavoredtaxoninthisinitialecosystemwith alownutrientcontent,becausemanyofthemhavearange ofmetabolism.42Someofthegenerainourstudyhavebeen
reportedbyotherstohaveparticularweatheringcapabilities, suchasSphingomonassp.,43Pseudomonassp.44and Janthinobac-teriumsp.25 Thesegenerashouldbefurtherinvestigatedfor
thesecapabilities.Studiesshowapositivecorrelationbetween Proteobacteriaand thesoilpH; incontrast,anegative rela-tionshipbetweenActinobacteriaandsoilpHwasreportedby Philippotetal.45
Apreviousstudyfoundthatbacterialnumbersdepended mostlyonthesoilageafterdeglaciationintheDammaglacier foreland46andintheLymanglacierforeland.47Liuetal.32also
foundsimilarresults.Theseresultssuggestthatthenumber andactivityofmicrobialpopulationsincreasewithsoil devel-opment after glacial retreat.46 Other studies also reported
thatmicrobialabundancehassignificantcorrelationswithsoil enzymeactivitiesinthemountainvalleywetland,48reclaimed
soilonasurfacecoalmine,49andpaddysoil.50TheRDAand
hierarchical cluster analysis showed the same result, that thebacterialsuccessionintheTianshanNo.1glaciercanbe dividedintothreesuccessionalperiods:anearlystage(10a), amiddlestage(25–74a),andalatestage(100–130a).Similar resultswerereportedbyHuangetal.51forcoppermine
tail-ings.Theseresultsindicatethatsoilmicrobesplayarolein thedevelopmentofthebaresoilintheglacierforeland, sug-gestingthatmicrobialsuccessioncorrelateswiththesoilage alongtheforeland.
Conflicts
of
interest
Theauthorsdeclarenoconflictsofinterest.
Acknowledgements
ThisworkwasfundedbytheNaturalScienceFoundationof China(Nos.31500429,31170465),theNationalBasicResearch Program(973)ofChina(No.2012CB026105),the China Post-doctoralScience Fund(2014M562477), and the Scienceand TechnologyProjectsinGansuProvince(1506RJZA291)China.
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