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The carriage of the serine-aspartate repeat protein-encodingsdr genes among Staphylococcus aureuslineages

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The

Brazilian

Journal

of

INFECTIOUS

DISEASES

Original

article

The

carriage

of

the

serine-aspartate

repeat

protein-encoding

sdr

genes

among

Staphylococcus

aureus

lineages

Huanle

Liu

a

,

Jingnan

Lv

a

,

Xiuqin

Qi

a

,

Yu

Ding

a

,

Dan

Li

a

,

Longhua

Hu

c

,

Liangxing

Wang

b,∗

,

Fangyou

Yu

a,∗

aDepartmentofLaboratoryMedicine,TheFirstAffiliatedHospitalofWenzhouMedicalUniversity,Wenzhou,China bDepartmentofRespiratoryMedicine,TheFirstAffiliatedHospitalofWenzhouMedicalUniversity,Wenzhou,China cDepartmentofLaboratoryMedicine,TheSecondAffiliatedHospitalofNanchangUniversity,Nanchang,China

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i

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n

f

o

Articlehistory: Received12April2015 Accepted5July2015

Availableonline13August2015

Keywords:

Staphylococcusaureus sdrgenes

Clonallineages

a

b

s

t

r

a

c

t

Theserine-aspartaterepeatproteins(Sdr)aremembersofa familyofsurfaceproteins andcontributetothepathogenicityofStaphylococcusaureus.Among288S.aureusisolates including158and 130associatedwith skinandsofttissueinfectionsandbloodstream infection,respectively;275(95.5%)werepositiveforatleastoneofthreesdrgenestested. ThepositivityratesforsdrC,sdrD,andsdrEamongS.aureusisolateswere87.8%(253/288), 63.9%(184/288),and68.1% (196/288),respectively.224(77.8%)of288isolates were con-comitantlypositivefortwoorthreesdrgenes.Therewasanassociationbetweencarriage ofsdrE and methicillin-resistantS. aureus (MRSA)isolates, while the carriage rates of sdrCandsdrD inMRSAisolatesweresimilarto thosein methicillin-sensitiveS. aureus (MSSA)isolates.Theprevalenceofco-existence ofsdrCandsdrE amongMRSAisolates wassignificantlyhigherthanthatamongMSSAisolates(p<0.05).AllST1,ST5,ST7,and ST25isolateswerepositiveforsdrD.WhileallST121andST398isolateswerenegativefor sdrD.AllST59andST88isolateswerepositiveforsdrE.AllST1isolateswereconcomitantly positiveforsdrCandsdrD.ConcomitantcarriageofsdrC,sdrD,andsdrEwasfoundamong allST5,75.0%(9/12)ofST1, 69.2%(9/13)ofST6,78.6%(11/14)ofST25,and90.9%(20/22) ofST88isolates.sdrDwaslinkedtoCC5,CC7andCC88isolates,especiallyCC88isolates. TherewasastrongassociationbetweenthepresenceofsdrEandCC59,CC88,andCC5 isolates.AsignificantcorrelationbetweenconcomitantcarriageofsdrC,sdrD,andsdrEand CC88isolateswasfound.sdrC-positive,sdrD-positiveandsdrE-negativegeneprofilewas significantlyassociatedwithCC7clone.TherewasanassociationbetweensdrC-positive, sdrD-negative,and sdrE-positive gene profile and CC59isolates. A correlation between sdrC-positive,sdrD-negative,andsdrE-negativegeneprofileandCC121clonewasfound. MoreCC59 isolates carried sdrC-negative, sdrD-negative, and sdrE-positive gene profile

Correspondingauthors.

E-mailaddresses:wangliangxin2014@163.com(L.Wang),wzjxyfy@163.com(F.Yu).

http://dx.doi.org/10.1016/j.bjid.2015.07.003

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relativetootherfourCCsisolates.AllST1andST5,95.2%(20/21)ofST188and95.2%(20/21) ofST630isolateswerepositiveforsdrC.Takentogether,ourinvestigationindicatedthat differentS.aureuslineageswereassociatedwithspecificpatternsofcarriageofsdrgenes.

©2015ElsevierEditoraLtda.Allrightsreserved.

Introduction

Staphylococcus aureus is a frequently encountered human pathogen which is the cause of a wide range of infec-tious diseases, such as skin and soft tissue infections (SSTIs),foreign-bodyinfections,pneumonia,septicarthritis, osteomyelitis,sepsis,endocarditis,andbloodstreaminfection (BSI)inbothhospitalandcommunitysettings.1 Theability ofS.aureustosuccessfullypersistwithinthehostsislargely dueto abatteryofvirulencefactors which promote adhe-sion,acquisition ofnutrients,and evasionofhostimmune responses.2,3 Many S. aureus isolates also produce one or moreadditionalexoproteinsincludingtoxicshocksyndrome toxin-1 (TSST-1), the staphylococcalenterotoxins (SEs), the exfoliativetoxins(ETs),leukocidins,andsoon.2–4Mostofthe adhesinsproducedbyS.aureusarecellwall-anchoredproteins andaregroupedintoasinglefamilywhichisnamedmicrobial surfacecomponentsrecognizingadhesivematrix molecules (MSCRAMM).MSCRAMM canbind extracellularmatrix pro-teins suchas fibronectin, fibrinogen, collagen, and elastin. Theserine-aspartate repeat proteins (Sdr),encoded bythe tandemlyarrayedsdrC, sdrD,and sdrEgeneslocatedinthe sdrlocus,are membersoftheMSCRAMMfamilyand mem-bersofafamilyofsurfaceproteinswiththepresenceofanR regioncontainingvariousnumbersoftheSer-Aspdipeptides encodedbythesdrgenes.5Sdrproteinsarenotcloselyrelated, withonly20 to30%identical aminoacid residues, indicat-ingthatdifferentSdrproteinshavedifferentrolesinS.aureus pathogenicity.6Therearetwo,three,orfiveadditional110-to 113-residuesequences(Bmotifs)inSdrproteins.Bmotifsare followedbysegmentscomposedoftheSDrepeats(Rregion) andtandemlyrepeatedinSdrC,SdrE,andSdrD,respectively.5 TheC-terminal end ofthe Sdr proteins isassociated with anchoringthe proteinstothebacterialcell wall.5 Josefsson etal.reportedthatatleasttwosdrgeneswerepresentinall testedS.aureusstrains.5ThesdrCgeneisalwayspresentinthe sdrgenes,whilesdrDandsdrEarenot.6,7However,the corre-lationbetweenthecarriageofsdrgenesandclonallineageof S.aureusclinicalisolatesisunknown.Theaimofthepresent studywastoinvestigatethedistributionofsdrgenesamong S.aureusisolatesandthecorrelationbetweenthecarriageof sdrgenesandclonallineageofS.aureusisolates.

Materials

and

methods

CollectionofS.aureusclinicalisolates

Atotalof288non-duplicateS.aureusclinicalisolates(single isolate per patient), including 158 associated with SSTIs and 130 associated with bloodstream infection (BSI), were

collectedforthisinvestigation.The130S.aureusBSIisolates were identified in patients from four hospitals in eastern China, including the first Affiliated Hospital of Wenzhou MedicalUniversityfromJanuary2004toDecember 2010(66 isolates),LishuiCenterHospitalin2010(10isolates),Taizhou CenterHospitalin2010(7isolates)andShaoxingMunicipal Second Hospital in 2010 (8 isolates) and Jiangxi Provincial ChildrenHospitalincentralChinain2010(39isolates).The 158S.aureusisolateswereidentifiedinpatientswithSSTIs atthefirstAffiliatedHospitalofWenzhouMedicalUniversity fromJanuary2012toSeptember2013(128isolates)andJiangxi Provincial Children Hospital in 2010(30 isolates). Of 288 S. aureusisolatestested,217and71wereisolatedfromadults andchildren,respectively.Allisolatestestedwereidentified asS.aureususingGramstain,positivecatalaseandcoagulase test results, and Vitek microbiology analyzer (bioMérieu, Marcyl’Etoile, France). All S.aureusisolates were testedat the clinical microbiology laboratory, Departmentof clinical laboratory, the firstAffiliated HospitalofWenzhouMedical University.TheEthicsCommitteeofthefirstAffiliated Hospi-talofWenzhouMedicalUniversityexemptedthisstudyfrom reviewbecausethepresentstudyfocusedonbacteria.

DNAextraction

S.aureusisolatestestedwereculturedonbloodagarovernight. Threetofourbacterialcoloniesweresuspendedin150␮L ster-iledistilledwaterwith10␮Llysostaphin(1mg/mL)(Sangon, China)andincubatedat37◦Cfor30min.DNAwasextracted usingtheGenomicDNAExtractionkitinaccordancewiththe manufacturer’s instructions (Sangon,China). Theextracted DNAwasstoredat−20◦CandpreparedforPCRamplification.

Detectionofsdrgenes

sdrC,sdrD,andsdrEweredetectedbyPCRassayswithprimers and conditions previously described.8 PCR products were sequencedfortheconfirmationofsdrC,sdrDandsdrE.S.aureus isolatespositiveforsdrC,sdrD,andsdrEdeterminedbyPCR andDNAsequencingwereusedascontrolstrainforeveryPCR assayforthedetectionofsdrC,sdrD,andsdrE.

Multilocussequencetyping(MLST)

MLST typing of S. aureus isolates tested was determined using PCRamplificationofinternalfragments oftheseven housekeeping genes of S. aureus as described previously, including carbamate kinase (arcC), shikimate dehydroge-nase (aroE), glycerol kinase (glp), Guanylate kinase (gmk), phosphateacetyltransferase(pta),triosephosphateisomerase (tpi), and acetyl coenzyme A acetyltransferase (yqi).9 All PCR productionsofseven housekeepinggenes testedwere

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Table1–CarriageofsdrC,sdrD,andsdrEamongS.aureusisolatescausingSSTIsandBSI.

S.aureusSSTIsisolates(n=158)(%) S.aureusBSIisolates(n=130)(%) p-Values

sdrC 136(86.1) 117(90.0) >0.05 sdrD 101(63.9) 83(63.8) >0.05 sdrE 112(70.9) 84(64.6) >0.05 sdrC+,sdrD+andsdrE+ 75(47.4) 59(45.4) >0.05 sdrC+,sdrD+andsdrE− 17(10.8) 20(15.4) >0.05 sdrC+,sdrD−andsdrE+ 26(16.5) 21(16.2) >0.05 sdrC−,sdrD+andsdrE+ 5(3.2) 1(0.9%) >0.05 sdrC+,sdrD−andsdrE− 18(11.4) 17(13.1) >0.05 sdrC−,sdrD+andsdrE− 4(2.5) 3(2.3) >0.05 sdrC−,sdrD−andsdrE+ 6(3.8) 3(2.3) >0.05

sequenced. The DNA sequences were compared with the existingsequencesavailableontheMLSTwebsiteforS.aureus (http://saureus.mlst.net), and STs were determined accord-ing tothe allelic profiles.Novel STs were deposited inthe MLSTdatabase (http://saureus.mlst.net/).Clonal complexes wereanalyzedusingeBURSTv3availableontheMLSTwebsite forS.aureus(http://saureus.mlst.net).

Statisticalanalysis

Differencesbetweengroupswereassessedbyusingthe chi-squaretest.

AnalyseswerecarriedoutwiththestatisticalsoftwareSPSS 13.0.p-values<0.05wereconsideredastatisticallysignificant.

Results

and

discussion

PrevalenceofsdrgenesamongS.aureusclinicalisolates SdrC promotes both bacterial adherence to surfaces and biofilmformation.10 TheexpressionofSdrCandSdrDeach contributed to the abilityofS. aureusto adhereto human desquamatednasalepithelial cells,whiletheexpressionof SdrE did not promote adhesion.11 However, Peacock et al. found a strong correlation between S. aureus invasiveness and the presenceofone ofthe allelic variantsof the sdrE gene.7PresenceofsdrDgeneinS.aureusisolateswas signif-icantlymoreprevalentinboneinfections.12Sitkiewiczetal. reportedthatSdrDplayedaroleintheinteractionsbetween S.aureusandhumanimmunesystem.13Inthepresentstudy,

275(95.5%)of288S.aureusisolateswerepositiveforatleast onesdrgenestested.ThepositivityratesofsdrC,sdrD,andsdrE amongS.aureusisolateswere87.8%(253/288),63.9%(184/288), and68.1%(196/288),respectively.ThecarriageofsdrC,sdrD, andsdrEamongS.aureusisolatesareshowninTable2. Previ-ousinvestigationsshowedthatsdrCwaspresentinallS.aureus isolatestested.6,7However,12.2%(35/288)ofS.aureusisolates testedwerenegativeforsdrCinthepresentstudy.The posi-tivityratesofsdrDandsdrEinthepresentstudywerehigher thaninthepreviousstudythatshowedpositivityratesofsdrD andsdrEinS.aueusisolatesof48%and56%,respectively.7Out of288isolates, 134(46.5%)were concomitantlypositivefor sdrC,sdrDandsdrE;31.2%(90/288)wereconcomitantly posi-tivefortwoofthethreesdrgenestested.While17.4%(51/288) oftheisolateswereonlypositiveforoneofthethreesdrgenes tested.

PrevalenceofsdrgenesamongMRSAandMSSAisolates

IntheUnitedStates,MRSAisolatesfrompatientswith com-plicated SSSIwere morelikelythan MSSAisolatestocarry sdrC sdrDand sdrEgenes.8 CarriageofsdrC, sdrD,and sdrE amongS.aureusisolatescausingSSTIsandBSIisshownin

Table1.Therewerenosignificantdifferencesinfrequencies ofsdrC,sdrD,andsdrEbetweenS.aureusisolatesfromSSTIs and BSI.Carriage ofsdrC, sdrD,and sdrEamongMRSAand MSSA isolates is shown in Table 2. In the present study, althoughthepositivityratesofthreesdrgenestestedamong MRSA isolateswerehigher than amongMSSAisolates, the significantdifferencewasonlyfoundintheprevalenceofsdrE (p<0.05).Previousstudyfoundastrongassociationbetween

Table2–CarriageofsdrC,sdrD,andsdrEamongS.aureus,MRSAandMSSAisolates.

S.aureusisolates(n=288)(%) MRSAisolates(n=109)(%) MSSAisolates(n=179)(%) p-Values

sdrC 253(87.8) 101(92.7) 152(84.9) 0.063 sdrD 184(63.9) 70(64.2) 114(63.7) >0.05 sdrE 196(68.1) 85(78.0) 111(62.0) 0.013 sdrC+,sdrD+andsdrE+ 134(46.5) 56(51.4) 78(43.6) 0.274 sdrC+,sdrD+andsdrE− 37(12.8) 12(11.0) 25(14.0) >0.05 sdrC+,sdrD−andsdrE+ 47(16.3) 25(22.9) 22(12.3) 0.032 sdrC−,sdrD+andsdrE+ 6(2.1) 1(0.9) 5(2.8) 0.4141 sdrC+,sdrD−andsdrE− 35(12.2) 8(7.3) 27(15.1) 0.063 sdrC−,sdrD+andsdrE− 7(2.4) 1(0.9) 6(3.4) 0.086 sdrC−,sdrD−andsdrE+ 9(3.1) 3(2.7) 6(1.7) >0.05 +,positive;−,negative.

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Table3–CarriageofsdrC,sdrDandsdrEamongfivemajorCCsS.aureusisolates. CC5(n=146)(%) CC7(n=34)(%) CC59(n=26)(%) CC88(n=23)(%) CC121(n=27)(%) p-Values sdrC 137(93.8) 29(85.3) 20(76.9) 22(95.7) 21(77.8) 0.067 sdrD 109(74.7) 28(82.4) 5(19.2) 22(95.7) 4(14.8) 0.000 sdrE 116(79.5) 9(26.5) 26(100) 23(100) 5(18.5) 0.000 sdrC+,sdrD+andsdrE+ 85(58.2) 8(23.5) 5(19.2) 21(91.3) 1(3.7) 0.000 sdrC+,sdrD+andsdrE− 18(12.3) 18(52.9) 0(0) 0(0) 0(0) 0.000 sdrC+,sdrD−andsdrE+ 24(16.4) 1(2.9) 15(57.7) 1(4.3) 3(11.1) 0.000 sdrC−,sdrD+andsdrE+ 5(3.4) 0(0) 0(0) 1(4.3) 0(0) 0.519 sdrC+,sdrD−andsdrE− 10(6.8) 2(0.59) 0(0) 0(0) 17(63.0) 0.000 SdrC−,sdrD+andsdrE− 1(0.7) 2(0.59) 0(0) 0(0) 0(0) 0.103 SdrC−,sdrD−andsdrE+ 2(1.4) 0(0) 6(23.1) 0(0) 1(3.7) 0.000 +,positive;−,negative.

thepresenceofthesdrDgeneandMRSAisolates,whilethe prevalenceofsdrEamongMRSAandMSSAisolateswasnot different.6 Conversely, there was an association between carriageofsdrEandMRSAisolates,whiletheprevalenceof sdrDinMRSAisolateswassimilartothatinMSSAisolatesin thepresentstudy.ApreviousstudyalsofoundthatallMRSA isolateswere positive fortwo or thethree sdr genes.6 Our investigationshowedthattheprevalenceofco-existenceof sdrCandsdrEamongMRSAisolateswassignificantlyhigher thanamongMSSAisolates(p<0.05).However,therewasno significant difference between the concomitant carriage of sdrC,sdrD,andsdrEamongMRSAandMSSAisolates(p<0.05). In35.8% (39/109)ofMRSAisolatesand in29.1%(52/179) of MSSA isolates there were concomitant positivity for two genestested. ComparedwithMRSAisolates(11.0%,11/109), moreMSSAisolates(22.3%,40/179)wereonlypositiveforone sdrlocus.ThesdrC-positive,sdrD-negative,andsdrE-negative geneprofilewasexclusivelyfoundamong29MSSAisolates.6 Incontrast,this geneprofilewasfound bothinMRSAand MSSAisolatesinthe present study.Allgene profilesofsdr genes were found among MSSA isolates. However, sdrC-negative, sdrD-positive,and sdrE-negative gene profilewas notfoundamongMRSAisolatesexceptoneisolate.

Prevalenceofsdrgenesamongdifferentclonalcomplexes

Atotal of 59 STs were identified among288 S.aureus iso-latestested.Fiveclonalcomplexes(CCs)accountingformore than20isolates,includingCC5,CC7,CC59,CC88,andCC121 wereidentifiedbyclusteringanalysisusingeBURSTv3 avail-ableontheMLSTwebsiteforS.aureus(http://saureus.mlst.net). CC5,CC7,CC59,CC88,andCC121accountedfor146,34,26,23 and27S.aureusisolates,respectively.Among146CC5isolates 27STs wereidentified, including ST188(21isolates),ST630 (21isolates), ST25 (14isolates), ST239(13 isolates),ST6(13 isolates),ST1(11isolates),ST5(11isolates),andST965(9 iso-lates).FiveSTs includingST7,ST774, ST789,ST943, andST 2833were foundamong34 CC7isolates,amongwhich ST7 wasthepredominantSTaccountingfor30isolates.Among26 CC59isolates,23,1,1,and1belongedtoST59,ST749,ST2201, and ST2832, respectively. Only two STs, ST88 (22 isolates), andST1219(oneisolate)wereidentifiedamongCC88isolates. Atotal ofsevenSTswere found among27CC121 isolates, includingST121(11isolates),ST120(10isolates),ST946(two isolates),ST2209(one isolate), ST2210(one isolate), ST2213

(one isolate),and ST2213(one isolate). Thesedata indicate thatincludedS.aureusisolatesexhibitedconsiderablegenetic heterogeneity.

Thedistributionofsomevirulencegeneswascorrelated withthedifferentMRSAlineages.14,15AllST1andST5,95.2% (20/21)ofST188and95.2%(20/21)ofST630isolateswere posi-tiveforsdrC.AllST1,ST5,ST7,andST25isolateswerepositive forsdrD.WhileallST121andST398isolateswerenegativefor sdrD.AllST59andST88isolateswerepositiveforsdrE.AllST1 isolateswereconcomitantlypositiveforsdrCandsdrD. Con-comitantcarriageofsdrC,sdrD,andsdrEwasfoundamongall ST5,75.0%(9/12)ofST1,69.2%(9/13)ofST6,78.6%(11/14)of ST25,and90.9%(20/22)ofST88isolates.However,fiveofseven ST39isolateswerenegativeforsdrC,sdrD,andsdrE.

CarriageofsdrC,sdrD,andsdrEamongfivemajorCCs iso-latesisshowninTable3. InadditiontoCC59isolateswith ansdrC prevalenceof76.9%,the prevalenceofsdrCamong CC5, CC7,CC88,and CC121isolateswere morethan85.0%, among which CC88isolates had the highest prevalenceof sdrC(95.7%).Therewerenodifferencesinthepositivityrates of sdrCamong fivemajor S.aureus clones(p=0.067). How-ever,thepositivityratesofsdrDamongCC5,CC7,andCC88 isolateswere high to74.7%,82.4%,and 95.7%,respectively, whilethe rates amongCC59and CC121 isolateswere only 19.2%and14.8%,indicatingthatsdrDwaslinkedtoCC5,CC7, and CC88isolates, especiallyCC88isolates.Comparedwith CC59andCC88isolateswithansdrEprevalenceof100%and CC5 isolates with an sdrE prevalence of 79.5%, the preva-lence ofsdrEamongCC7 (26.5%)and CC121isolates(18.5%) were significantlylower (p<0.05). Therewas astrong asso-ciation betweenpresenceofsdrEand CC59,CC88,and CC5 isolates.Surprisingly, 91.3%ofCC88isolateswere concomi-tantlypositiveforsdrC,sdrDandsdrE,followedbyCC5isolates (58.2%), while concomitant carriage of the three sdr genes tested among CC7 (23.5%), CC59 (19.2%), and CC121 (3.7%) isolateswasmuchlower,indicatingasignificantcorrelation between concomitant carriage of sdrC, sdrD, and sdrE and CC88isolates.TheprevalenceofsdrC-positive,sdrD-positive, andsdrE-negativegeneprofileamongCC7isolates(52.9%)was higherthaninotherCCsisolates,especiallyCC59,CC88,and CC121 isolateswherethisgeneprofilewasnotfound, indi-catingthatsuchprofilewassignificantlyassociatedwiththe CC7clone.sdrC-positive,sdrD-negative,andsdrE-positivegene profilewasfoundin57.7%ofCC59isolates,whichwas signif-icantlyhigherthanthatinotherCCsisolates(p<0.05).There

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wasanassociationbetweensdrC-positive,sdrD-negative,and sdrE-positivegeneprofilewithCC59isolates.Thepositivity ratesofsdrC-negative,sdrD-positive,sdrE-positivegene pro-fileamongfivemajorcloneswereverylow,andabsentamong CC7,CC59,andCC121isolates.TheprevalenceofsdrC-positive, sdrD-negative,and sdrE-negative geneprofileamongCC121 isolates(67.3%)wasmuchhigherthaninotherCCsisolates (p<0.05),indicatingacorrelationbetweensdrC-positive, sdrD-negative,and sdrE-negative gene profile withCC121 clone. Sabatetal.reportedthatS.aureusisolateswithsdrC-positive, sdrD-negative,andsdrE-negativegeneprofilebelongedtoST1, ST12,ST25,ST30,ST34,ST39, ST47,and ST49.6 MoreCC59 isolates(23.1%)carriedsdrC-negative,sdrD-negative,and sdrE-positivegeneprofilerelativetootherfourCCsisolates.

S.aureusinfectionsusuallyresultfromthecombinedaction ofavarietyofvirulencefactors.However,thecontributionof particularvirulencefactorstoS.aureusinfectionisunclear.To furthercastlightontheroleofsdrgenesinS.aureusinfections causedbydifferentclones,alargernumberofS.aureusclinical isolateswithspecificclonesshouldbeinvestigated.

Inconclusion,ourinvestigationindicatedthatdifferentS. aureuslineageswereassociatedwithspecificpatternsof car-riageofsdrgenes.

Conflicts

of

interest

Theauthorsdeclarenoconflictsofinterest.

Acknowledgement

Thisstudy was supportedbygrantsfrom National Natural ScienceFundofChina(81271906H2002).

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