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A Protein Sequence Analysis Hardware Accelerator Based on Divergences

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Academic year: 2019

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Figure 2: A profile HMM with 4 nodes and the transition scores.
Table 1: Emission scores of amino acids for match and insert states of profile HMM of Figure 2
Figure 3: Divergence concept: alignment limits, initialized cells (with −∞ ), and alignment region, for a HMM with k nodes and a sequence of length n.
Figure 4: Phases of the Plan7-Viterbi-DA.
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