Genome sequencing
Identification of Salmonella for public health surveillance using whole genome sequencing
... whole genome sequencing (WGS) methodologies have resulted in the ability to perform high throughput sequencing of bacterial genomes at low cost making WGS an economically viable alternative to ...
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Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing.
... whole genome sequencing data was able to provide more accurate phylogenetic relationship than small sets of ...whole genome sequencing and phylogenetic analysis has been proven to provide ...
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Quantifying Next Generation Sequencing Sample Pre-Processing Bias in HIV-1 Complete Genome Sequencing
... full genome and deep sequencing dimensions have already been reported ...deep sequencing applications to RNA ...and sequencing of small genomic fragments following RT-PCR amplification of the ...
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Castor bean organelle genome sequencing and worldwide genetic diversity analysis.
... chloroplast genome sequencing [17,18]. If a reference chloroplast genome from a related species is available, primers can be designed to amplify multiple PCR fragments to cover and assemble the whole ...
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The "most wanted" taxa from the human microbiome for whole genome sequencing.
... rare sequencing errors and ...or sequencing or PCR ...the sequencing of the most prevalent taxa first represents a rational deployment of sequencing ...whole genome sequencing: ...
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Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica.
... Salmonella enterica is a common cause of minor and large food borne outbreaks. To achieve successful and nearly ‘real-time’ monitoring and identification of outbreaks, reliable sub-typing is essential. Whole ...
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Microbiota present in cystic fibrosis lungs as revealed by whole genome sequencing.
... However, the PCR approach used so far suffers from several limitations and may introduce biases in the observed microbiota compositions. Indeed, selected groups of organisms will be preferentially amplified by the ...
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Recent Progress in the Methods of Genome Sequencing
... the sequencing techniques referred above, it is difficult to say which one is better than another one, with each of them having its unique advantages and limits at the same ...paired-end sequencing and the ...
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Deep Whole-Genome Sequencing to Detect Mixed Infection of Mycobacterium tuberculosis.
... whole-genome sequencing (WGS) has been proved highly sensitive and discrimina- tive for studying population heterogeneity of ...the sequencing depth of minor strains was as low as 1× coverage, and ...
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Plantagora: modeling whole genome sequencing and assembly of plant genomes.
... better genome assemblies, based on their own chosen ...in sequencing methods and the assembly ...real sequencing data. In the future, with continued efforts, genome sequencing and ...
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Genome sequencing highlights the dynamic early history of dogs.
... high-quality genome sequences from three gray wolves, one from each of the three putative centers of dog domestication, two basal dog lineages (Basenji and Dingo) and a golden jackal as an ...
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Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus.
... for sequencing, resulting in assembled genomes of 115, 90, 71 and 95 Mbps, respectively (Tables S1 and ...whole genome amplification efficiencies among the four ...in genome assemblies of 116 and 117 ...
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Sequencing and comparative genome analysis of two pathogenic Streptococcus gallolyticus subspecies: genome plasticity, adaptation and virulence.
... between genome plasticity and genome adaptive ...streamlined genome, possibly evolved to adapt to a non-rumen ...of genome reduction/expansion were a much recent event due to environmental and ...
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Tibet Orbivirus, a novel Orbivirus species isolated from Anopheles maculatus mosquitoes in Tibet, China.
... a genome consisting of 10 segments of double- stranded RNA (dsRNA), with a distribution pattern of ...throughput sequencing of culture supernatant was used for viral ...Complete genome ...
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Ancestral alleles in the human genome based on population sequencing data.
... Ancestral allele information is useful for genetics studies. Previously, the identification of an- cestral alleles was primarily based on sequence alignments between species. Alternative ways to identify ancestral ...
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Comparative genomics and pan-genomic study of genus Corynebacterium
... the genome announcement of the ...The genome sequencing was performed using two different methodologies: (i) Pyrosequencing through 454 Genome Sequencer FLX system approach (Roche Applied ...
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De novo assembly of the Indo-Pacific humpback dolphin leucocyte transcriptome to identify putative genes involved in the aquatic adaptation and immune response.
... Genome sequencing and global exploration of transcriptome are effective methods to obtain abundant functional sequences involved in various biological ...whole- genome sequencing, the ...
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Analysis of anoxybacillus genomes from the aspects of lifestyle adaptations, prophage diversity, and carbohydrate metabolism.
... Several sequences in the Anoxybacillus spp. SK3-4 and DT3-1 were unique among all Anoxybacillus spp. The stretch of sequence in locus C289_2549 22555 of Anoxybacillus sp. SK3-4 encoded various proteins that showed high ...
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CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing.
... The software library underlying CNVkit serves as a basis for developing and benchmark- ing a variety of approaches to call, analyze and visualize copy number, not unlike the Geno- micRanges framework in Bioconductor ...
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Next Generation Semiconductor Based Sequencing of the Donkey (Equus asinus) Genome Provided Comparative Sequence Data against the Horse Genome and a Few Millions of Single Nucleotide Polymorphisms.
... whole genome level so far. Here, we sequenced the genome of two male donkeys using a next generation semiconductor based sequencing platform (the Ion Proton sequencer) and compared obtained sequence ...
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