Sequence Analysis
Multiple Gene Sequence Analysis Using Genes of The Bacterial DNA Repair Pathway
... gene sequence analysis based on genes of DNA repair pathway was used to compare bacterial ...gene sequence analysis using DNA repair genes had better resolution at class level than the ...
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MULTILOCUS SEQUENCE ANALYSIS (MLSA) OF BRADYRHIZOBIUM STRAINS: REVEALING HIGH DIVERSITY OF TROPICAL DIAZOTROPHIC SYMBIOTIC BACTERIA Jakeline Renata Marçon Delamuta
... the analysis of the 16S rRNA is often ...(multilocus sequence analysis) approach. Analysis of each gene and of the concatenated housekeeping genes captured a considerably higher level of ...
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Determining physical constraints in transcriptional initiation complexes using DNA sequence analysis.
... Eukaryotic gene expression is often under the control of cooperatively acting transcription factors whose binding is limited by structural constraints. By determining these structural constraints, we can understand the ...
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Sequence analysis of the rDNA intergenic spacer of Metarhizium strains
... sa Agropecuária - Embrapa) for providing the Brazilian strains. MCP was a recipient of a FAPERGS fellowship. RGM was a recipient of fellowship from the Catholic Uni- versity Rio Grande do Sul (Pontifícia Universidade ...
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Structure-from-motion for MAV image sequence analysis with photogrammetric applications
... Contiguous sequence with ground-truth camera trajectory (Rubble 2) The reconstruction results for another sequence con- sisting of 4234 images can be found in Figure ...
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HOMOLOGY MODELLING AND SEQUENCE ANALYSIS OF anxC3.1
... During the last two decades, the number of sequence known proteins has increased rapidly. In contrast, the corresponding increment of structure known protein is much slower. The unbalanced situation has critically ...
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Complete Nucleotide Sequence Analysis of a Brazilian Dengue Virus Type 2 Strain
... genome sequence of a DEN- 2 Brazilian strain (BR64022/98), we designed primers to amplify contiguous segments of approximately 500 base pairs across the entire sequence of the viral ...
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Multilocus Sequence Analysis and rpoB Sequencing of Mycobacterium abscessus (Sensu Lato) Strains
... comparative analysis of the data for rpoB and MLSA confirmed that such horizontal transfer has occurred: almost 10% of the isolates studied had discor- dant MLSA and rpoB ...rpoB sequence belonging to the ...
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Phylogenetic relationships of the most common pathogenic Candida species inferred by sequence analysis of nuclear genes
... nucleotide sequence data, an algorithm was developed for constructing a phylogenetic tree by the ML method (Felsenstein, ...acid sequence data, the likelihood method was proposed by using an empirical ...
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PCR amplification and sequence analysis of the rat Sox3 gene
... Sox3/SOX3, an X-linked member of the family, is considered to be one of the earliest neural markers in vertebrates, playing a role in specifying neuronal fate (B r u n e l l i et al., 2003). Studies performed on Sox3 ...
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Next-generation sequence analysis of cancer xenograft models.
... and sequence depth-of-coverage of relevant regions revealed that the great majority (9 out of 15) of these variants were detectable, but were below the allele frequency threshold of ...the sequence depth of ...
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A Protein Sequence Analysis Hardware Accelerator Based on Divergences
... the sequence-profile ...query sequence when compared to a given profile HMM but also generates the divergence algorithm coefficients in hardware, which helps to speed up the subsequent alignment generation ...
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Mammalian comparative sequence analysis of the Agrp locus.
... genomic sequence relative to the first position of the Agrp translational start ...GERP analysis is independent of sequence annotation, constrained sequences overlap with the IREs (yellow), putative ...
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Predicting the physiological role of circadian metabolic regulation in the green alga Chlamydomonas reinhardtii.
... the respective genes. For ASL and NiR CHLAMY1 binding has been shown experimentally and the introduction of the respective 3 9 UTR sequences into luciferase constructs lead to a robust circadian enzyme activity [25]. ...
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The chitinase C gene PsChiC from Pseudomonas sp. and its synergistic
... high sequence similarity (Henrissat, 1991). Based on the 16S rDNA sequence analysis, strain TXG6-1 belongs to the genus Pseudomonas, and comparison of the amino acid sequence of PsChiC from ...
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MATERIALS AND METHODS Sample collection
... library sequence analysis showed that the prevalence of lactic acid bacteria was limited to the first five days of fermentation, and a lower prevalence of these bacteria was detected at later time ...
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Purification, cloning, characterization and essential amino acid residues analysis of a new ι-carrageenase from Cellulophaga sp. QY3.
... substrate. Sequence analysis and structure modeling showed that CgiA_Ce is indeed a new member of family ...Moreover, sequence analysis of i-carrageenases revealed that the amino acid residues ...
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Hepatitis C virus (HCV) genotype 1 subtype identification in new HCV drug development and future clinical practice.
... Direct sequence analysis of a sufficiently long portion of the NS5B gene followed by phylogenetic analysis is the reference method for identification of HCV genotype and subtype ...further ...
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Analysis and chromosomal mapping of Leishmania (Leishmania) amazonensis amastigote expressed sequence tags
... microarray analysis of ...The sequence analysis of our clones showed that some ESTs had iden- tities with sequences previously annotated in ...this analysis, eight ...
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Clonagem e caracterização do gene que codifica a glicoproteína de 70 kDa (gp70) de Paracoccidioides brasiliensis
... the sequence using specific overlapped prim- ers SE1/SE1, SE3 and S4 (Table 1 and ...with Sequence Analyzer software Chromas ...exhaustive sequence analysis, it was clear that there were no ...
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