[PDF] Top 20 Characidae, Bryconinae) based on the mitochondrial gene 16S rRNA
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Characidae, Bryconinae) based on the mitochondrial gene 16S rRNA
... within Characidae are still poorly known, and even monophyly is uncertain (Weitzman and Malabarba, ...ered the family Characidae as a characiform clade, though excluding the subfamily ... See full document
6
Molecular detection of Anaplasma species in dogs in Colombia
... phagocytophilum, based on 16S rRNA phylogenetic ...approach based on 16SrRNA gene, also found similar results when analyzed sequences obtained from Dermacentor nitens ... See full document
6
Classificação taxonómica de procariotas com base em sequências simuladas do gene 16S rRNA
... of the 16S rRNA gene, in which base substitutions were introduced according to a statistical model that simulates the distribution of sequencing ...errors. Based on sim16S ... See full document
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RFLP analysis of a PCR-amplified fragment of the 16S rRNA gene as a tool to identify Enterococcus strains
... standardise the PCR-RFLP technique: Enterococ- cus asini ATCC 700915, Enterococcus avium ATCC 14025, Enterococcus canis LMG 11738, Enterococcus casseliflavus ATCC 25788, Enterococcus columbae ATCC 51263, ... See full document
6
Erwinia teleogrylli sp. nov., a Bacterial Isolate Associated with a Chinese Cricket.
... years. The isolated bacteria were Gram- negative, facultatively anaerobic, oxidase-negative ...of the 16S rRNA gene sequence indicated that the strain belongs to either ... See full document
12
Molecular Authentication of Meats from Three Terrestrial Birds Based on Pcr-Rflp Analysis of the Mitochondrial 12S rRNA Gene
... a mitochondrial gene was developed for the identification of chicken (Gallus gallus), quail (Coturnix coturnix), and common pigeon (Columba livia) ...from the 12S rRNA gene of ... See full document
6
Molecular evidence for the polyphyly of Bostryx and genetic diversity of Bostryx aguilari
... reconstructions based on the partial 16S rRNA gene using NJ, MP, ML and BI resulted in trees with simi- lar topologies ...13). The group of species known as the ... See full document
8
Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system
... in the barcode and primer would be correlated with the error rate for the entire ...between the number of mismatches to the barcodes and primers and the error rate of the ... See full document
16
Proteus mirabilis ASSOCIATED WITH TWO SPECIES OF VENEZUELAN OYSTERS
... with the API ID 32E and API rapid ID 32E systems. A dendrogram based on the API ID 32E biochemical reactions of our isolates was produced with the computer package MINITAB ...using ... See full document
5
Caracterização de rizóbios indicados para produção de inoculantes por meio de sequenciamento parcial do 16S rRNA.
... – The aim of this work was to compare the partial sequences of 16S rRNA gene of rhizobia strain patterns already classiied with strains recommended for the production of ... See full document
8
Chitinolytic Bacteria Isolated from Chili Rhizosphere: Chitinase Characterization and Its Application as Biocontrol for Whitefly (<i>Bemisia tabaci</i> Genn.)
... Based on sequence of the 16S rRNA gene, ...among the 39 chitinolytic bacteria which were isolated from rice rhizosphere, only 11 isolates produced zone of clearance over ... See full document
6
The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies.
... within the 16S rRNA gene has quickly become a powerful method for analyzing the membership and structure of microbial ...include the effects of alignment quality, the best ... See full document
16
Isolation of endophytic bacteria from arboreal species of the Amazon and identification by sequencing of the 16S rRNA encoding gene
... using the kit DNA Sequencing-Big Dye Terminator Cycle Sequencing Ready ABI Prism version ...water. The primer used was M13/pUC 1211 (forward; 5’-GTA AAA CGA CGG CCA ...GT-3’). The quality of ... See full document
7
The Hidden Diversity of Zanclea Associated with Scleractinians Revealed by Molecular Data.
... as the most numerous host group found in association with hydroids belonging to the Zanclea ...of the molecular phylogenetic relationships among Zanclea species associated with scleractinians is just ... See full document
20
First record of Ornithodoros faccinii (Acari: Argasidae) on toads of genus Rhinella (Anura: Bufonidae) in Brazil
... for the mitochondrial 16S rRNA gene were aligned with another 60 Argasidae sequences retrieved from GenBank using Clustal X (THOMPSON et ...using the GeneDoc ...in the ... See full document
6
Isolation and 2,4-D-degrading characteristics of Cupriavidus campinensis BJ71
... DNA. The PCR amplification conditions were as follows: 95 °C for 5 min; followed by 35 cycles of 95 °C for 45 s, 55 °C for 45 s, and 72 °C for 90 ...USA). The PCR products were se- quenced by Takara ... See full document
9
Evolutionary insight into the functional amyloids of the pseudomonads.
... to the biofilm, mediate bacterial aggregation and may function as virulence factor by binding specifically to host cell ...system, the Fap system, was previously characterized in the genus ... See full document
9
De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units
... assess the quality of OTU assignments. Some have focused on the time and memory required to process a dataset (Sun et ...about the quality of the OTU ...judge the quality of a ... See full document
23
A heritability-based comparison of methods used to cluster 16S rRNA gene sequences into operational taxonomic units
... Using the distribution of heritability estimates as a measure of biological representation, we have demonstrated that de novo clustering produces OTUs that are more representative of functional microbial units ... See full document
19
Diversidade bacteriana ruminal em bovinos Nelore
... – The rumen is an open ecosystem in which the food consumed by ruminant is fermented to yield short-chain fatty acids and microbial protein, that in turn serve as a source of energy and protein for ... See full document
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