Genes and transcripts
Brassinosteroids-Induced Systemic Stress Tolerance was Associated with Increased Transcripts of Several Defence-Related Genes in the Phloem in Cucumis sativus.
... transportation and defense responses. Here, we identified four genes that are related with defense response, which imply that they are possibly involved in EBR- regulated systemic ...four transcripts ...
8
SEEDSTICK is a master regulator of development and metabolism in the Arabidopsis seed coat.
... maturity and after fertilization until 5 Days After Pollination ...filter and 85% were mapped back to the Arabidopsis TAIR10 ...locations and each could thus be assigned to a single annotated TAIR10 ...
15
Analysis of energetically biased transcripts of viruses and transposable elements
... cultures and challenged with an RNAi-based treatment (Wu et ...overlapping genes (“Pol” and “S”) in the same strand (frame +1 and ...frames and thus affected the fifth nucleo- tide in ...
8
Sequence features of E. coli mRNAs affect their degradation.
... translation and a longer association with the ribosome can protect the mRNA from ...time and thereby decrease protection from ...some genes, efficient codons are accompanied by a high translation ...
6
Interaction with diurnal and circadian regulation results in dynamic metabolic and transcriptional changes during cold acclimation in Arabidopsis.
... metabolites and transcripts are truly cold-responsive and which are changed indirectly due to the affect of cold on the circadian clock or via diurnal ...diurnal and circadian cycles observed ...
19
Insecticide resistance is mediated by multiple mechanisms in recently introduced Aedes aegypti from Madeira Island
... eight transcripts encoding putative cuticular proteins were up-regulated possibly indicating alteration of the cuticle as a mechanism of resis- ...[16], and the Plasmodium vector Anopheles funestus ...three ...
16
Alternative promoters influence alternative splicing at the genomic level.
... of transcripts per exon for human genes (A) and mouse genes (B), ...of transcripts covering a given gene was extracted from the AltSplice ...gene and R = ...TPs’’ and ...
8
Two metallothionein genes in Oxya chinensis: molecular characteristics, expression patterns and roles in heavy metal stress.
... homeostasis and detoxification in living ...MT genes (OcMT1 and OcMT2) from Oxya chinensis, analyzed the expression patterns of the OcMT transcripts in different tissues and at varying ...
10
A systems biology approach identifies a R2R3 MYB gene subfamily with distinct and overlapping functions in regulation of aliphatic glucosinolates.
... candidate genes play a role in biosynthesis of aliphatic glucosinolates in planta, loss-of-function alleles in MYB28, MYB29 and MYB76 were obtained [43–45] and the borders of the T-DNA insertions ...
16
The choice of the filtering method in microarrays affects the inference regarding dosage compensation of the active X-chromosome.
... X and on autosomes separately (model ...filtered transcripts, which corresponded to moving the horizontal red lines from the bottom to the top (model 1) or the vertical green lines from the left to the ...
9
Genome-Wide Reprogramming of Transcript Architecture by Temperature Specifies the Developmental States of the Human Pathogen Histoplasma.
... which transcripts are translated, we also examined the translational efficiency of transcripts in yeast and hyphal ...yeast and hyphal TE values for transcripts that exhibited ...
35
Alternative splicing of sept9a and sept9b in zebrafish produces multiple mRNA transcripts expressed throughout development.
... analysis and BLAST searches using known human SEPT9 transcripts, we identified multiple mRNA transcripts produced from two different zebrafish sept9 genes, sept9a and ...produces ...
7
R-seqQI: RNA-Seq Quality Indicator
... cells and tissues, and help to understand the processes related to development and ...understand and quantify ...of transcripts in a given cell, tissue or organism, analyzes the ...
137
Tight regulation of unstructured proteins: from transcript synthesis to protein degradation
... regulatory and cellular properties for the three different groups of proteins (S, M and U) in ...median, and the extreme ...quartiles and the interquartile range (IQR) is calculated as the ...
8
The prevalence and regulation of antisense transcripts in Schizosaccharomyces pombe.
... conditions, and thus are unlikely to result from data irregularity and/or experimental ...antisense transcripts are highly enriched in meiotic gene loci (p = ...S4 and Supplementary ...
10
Patterning of the dorsal-ventral axis in echinoderms: insights into the evolution of the BMP-chordin signaling network.
... morphants and the absence of expression Figure ...tbx2/3 and msx in nested ...(iii), and embryos injected with nodal morpholino at the one-cell stage then injected into one blastomere with alk4/5/7QD ...
26
Detection of P element transcripts in embryos of Drosophila melanogaster and D. willistoni
... maternal genes, was identified in the IVS3 intron and appears to allow only unspliced transcripts to be maternally transmitted by the nurse cells to the oocyte, where they prevent transposase enzyme ...
11
Aquaporins and the control of the water status in coffee plants
... PIP genes were differentially expressed in the various coffee organs, while TIP genes appeared to be constitutively expressed in all ...of transcripts which are specific to that gene due to a ...
15
In silico hybridization and functional annotation
... fastidiosa and the other with non-inoculated ...37 genes were found to have significant variation at the transcriptional ...up-regulated and 16 were down-regulated in plants with ...down-regulated ...
8
Identification and characterization of long non-coding RNAs related to mouse embryonic brain development from available transcriptomic data.
... the transcripts analyzed in this study were assembled using a widely used yet modified protocol ...assemble transcripts into known gene models or novel gene models by cufflinks guided by known gene ...
16