homology modeling
Protein homology modeling.
... PROTEIN HOMOLOGY MODELING. Modeling methods to derive 3D-structure of proteins have been recently ...Protein homology-modeling, also known as comparative protein modeling, is ...
7
Isolation, homology modeling and renal effects of a Ctype natriuretic peptide from the venom of the Brazilian yellow scorpion (Tityus serrulatus)
... Homology modeling of TsNP was conducted using MODELLER 9v5 (Sali and Blundell, 1993), with a standard internal setup and no additional geometrical ...
8
In silico sequence analysis and homology modeling of predicted beta-amylase 7-like protein in Brachypodium distachyon L.
... Beta-amylase (β-amylase, EC 3.2.1.2) is an enzyme that catalyses hydrolysis of glucosidic bonds in polysaccharides. In this study, we analyzed protein sequence of predicted beta-amylase 7-like protein in Brachypodium ...
7
Homology modeling and epitope prediction of Der f 33
... Dermatophagoides farinae (Der f), one of the main species of house dust mites, produces more than 30 allergens. A recently identified allergen belonging to the alpha-tubulin protein family, Der f 33, has not been ...
6
Homology modeling of human γ-butyric acid transporters and the binding of pro-drugs 5-aminolevulinic acid and methyl aminolevulinic acid used in photodynamic therapy.
... study, homology models of the four human GAT subtypes were constructed using three x-ray crystal structures of the homologous leucine transporter (LeuT) as ...the homology models may hence provide tools for ...
9
Molecular Evolution and Characterization of Hemagglutinin (H) in Peste des Petits Ruminants Virus.
... virus invading the host, but also the important cause of the pathological changes in the host organism and presentation of clinical symptoms [26]. Because of this background, some researchers have explored the ...
16
Structural and functional evaluation of C. elegans filamins FLN-1 and FLN-2.
... Filamins are long, flexible, multi-domain proteins composed of an N-terminal actin-binding domain (ABD) followed by multiple immunoglobulin-like repeats (IgFLN). They function to organize and maintain the actin ...
12
In silico analysis identifies a C3HC4-RING finger domain of a putative E3 ubiquitin-protein ligase located at the C-terminus of a polyglutamine-containing protein
... Figure 1. Edited sequence alignment with best scoring template 1 I YM for homology modeling. First and last lines: labeling of the zinc finger motifs indicates to which cation the amino acid belongs, “Zn1” ...
7
Computer Modeling of Human Delta Opioid Receptor
... The final MSA for DOR is presented in Fig. 1. This result indicates that the sequences chosen are reasonably good to be used for homology modeling. The percentage of homologous residues in TM regions proved ...
12
HOMOLOGY MODELLING AND SEQUENCE ANALYSIS OF anxC3.1
... During the last two decades, the number of sequence known proteins has increased rapidly. In contrast, the corresponding increment of structure known protein is much slower. The unbalanced situation has critically ...
6
In Silico Molecular Modeling and Docking Studies on the
... by homology modeling method based on the template of tryparedoxin peroxidase from Crithidia fasciculata and selected compounds were docked to the active site ...
9
Diversity and three-dimensional structures of the alpha Mcr of the methanogenic Archaea from the anoxic region of Tucuruí Lake, in Eastern Brazilian Amazonia
... values. Homology modeling was used to de- termine the three-dimensional (3D) structures, for this the partial nucleotide sequence of the mcra were isolated and translated on their partial amino acid ...
11
Molecular And 3D-Structural Characterization Of Fructose- 1,6-Bisphosphate Aldolase Derived From Metroxylon Sagu
... Fructose-1,6-bisphosphate aldolase (FBAld) is an enzyme that catalyzes the cleavage of D-fructose-1,6-phosphate (FBP) to D-glyceraldehyde-3-phosphate (G3P) and dihydroxyacetone phosphate (DHAP), and plays vital role in ...
21
Structural insights from binding poses of CCR2 and CCR5 with clinically important antagonists: a combined in silico study.
... Computational modeling has become an essential tool in guiding and enabling rational decisions with respect to hypothe- sis-driven biological ...structure, homology modeling can provide a rational ...
14
Molecular Docking of Anopheles gambiae and Aedes aegypti Glutathione S-Transferases Epsilon 2 (GSTE2) Against Usnic Acid: an Evidence of Glutathione Conjugation
... The aim of this study was to develop a theoretical model using Anopheles gambiae GSTE2 structure as template for Aedes aegypti GSTE2 by homology modeling Docking simulations were performed for both the ...
6
FP Silva-Jr, FZ Veyl, J Clos, S Giovanni De Simone
... (30-35% homology to LaPABP) used on its modeling is summarized in ...the homology mod- eling procedure because it would furnish the right orien- tation of the two adjacent RRM linked by the variable ...
7
Applying Business Process Mode ling Techniques : Case Study
... Unified Modeling Language is a de facto standard in Software ...Business Modeling (Johnston, 2004), UML is not only a useful business process modeling tool, but most robust and flexible notation ...
12
A comparative study of analytical rosenthal, finite element, and experimental approaches in laser welding of aa5456 alloy
... numerical modeling and the analytical method is increased by enhancing the energy density of the laser ...numerical modeling and the analytical method at higher energy ...numerical modeling, the ...
25
TECHNOLOGICAL PROCESS MODELING AIMING TO IMPROVE ITS OPERATIONS MANAGEMENT
... the modeling procedure of one real technological ...of modeling. Sufficient data base for statistical modeling was constructed using the orthogonal factorial design of the ...
10
Developmental and paleontological insights into skull bone homology and evolution
... As it is obvious, very rarely paleontologists can use data of embryological origin, gene expression patterns or molecular networks to address such homology questions. For example, Rupert Riedl identified three ...
194