[PDF] Top 20 Assembly and annotation of the sardine (Sardina pilchardus) transcriptome
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Assembly and annotation of the sardine (Sardina pilchardus) transcriptome
... consists of DNA that gains structure in the chromosomes through its interaction with histones and other molecules ...Through the process of transcription, DNA is copied into RNA with ... See full document
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De novo transcriptome assembly and the putative biosynthetic pathway of steroidal sapogenins of Dioscorea composita.
... molecules and are synthesized by equally complex biosyn- thetic ...veal the biosynthesis of the active ...in transcriptome deep sequencing technology and bioinformatics have ... See full document
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De Novo Assembly and Characterization of Early Embryonic Transcriptome of the Horseshoe Crab Tachypleus tridentatus.
... network of signaling pathways and regulatory genes plays key roles during this process ...pathways and factors involved in the early embryonic development of ...is of great ... See full document
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Comparison of muscle transcriptome between pigs with divergent meat quality phenotypes identifies genes related to muscle metabolism and structure.
... LM of LW pigs is characterized by enrichment clusters of the cellular component GO terms for the extracellular region (cluster 1-LW) and the extracellular matrix part (clusters ... See full document
14
SNP discovery and development of a high-density genotyping array for sunflower.
... possible the development of high- throughput SNP genotyping platforms that allow for the simultaneous interrogation of thousands of single-nucleotide polymorphisms ...have the ... See full document
8
The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei.
... is the most frequently studied member of the Esociformes, the closest order to the diverse and economically important ...Salmoniformes. The ancestor of all ... See full document
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Towards decrypting cryptobiosis--analyzing anhydrobiosis in the tardigrade Milnesium tardigradum using transcriptome sequencing.
... length of 189 bp and a median of 177 bp (Figure 1B). The 41,536 hybrid 454+ Illumina non-redundant contigs (ABySS_hyb) of at least 100 bp contained ...Mb of data, with a mean ... See full document
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Transcriptome Analysis and Development of SSR Molecular Markers in Glycyrrhiza uralensis Fisch.
... clinical and industrial applications. Genetic resources of licorice are insufficient for analysis of molecular biology and genetic functions; as such, transcriptome sequencing must be ... See full document
12
Deep analysis of wild Vitis flower transcriptome reveals unexplored genome regions associated with sex specification
... novo assembly of the transcriptome of three flower developmental stages in three Vitis flower ...new assembly detected novel areas of tran- scription, mapping to regions ... See full document
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Transcriptome analysis of androgenic gland for discovery of novel genes from the oriental river prawn, Macrobrachium nipponense, using Illumina Hiseq 2000.
... total of 2,214 SSRs and a frequency of 17.80% was the most common type, dramatically more than the other types of tri-nucleotide repeat motifs (Figure ...composed of C ... See full document
13
De novo transcriptome assembly for the tropical grass Panicum maximum Jacq.
... map the reads of each sample to the reference ...total of 346,456 putative SNP positions in the unigenes using previously detailed parameters, as shown in Table ...bp of unique ... See full document
10
De novo assembly of the perennial ryegrass transcriptome using an RNA-Seq strategy.
... sequences of which 24,434 were predicted to be complete. Approximately 51,000 of the transcripts with a predicted peptide sequence also had a significant BLASTx with the Swiss-Prot NR database ... See full document
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De novo assembly and characterization of the transcriptome, and development of SSR markers in wax gourd (Benicasa hispida).
... novo assembly was carried out using Trinity method ...obtained. The sequencing data have been deposited in NCBI Sequence Read Archive (SRA, http:// ...number of SRA074508. The reads were first ... See full document
11
Comparative genomics and pan-genomic study of genus Corynebacterium
... reported the genome announcement of the ...from the urine of a young boy with an ectopic kidney. The genome sequencing was performed using two different methodologies: (i) ... See full document
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Transcriptomics of a giant freshwater prawn (Macrobrachium rosenbergii): de novo assembly, annotation and marker discovery.
... from the 454 GS-FLX sequencer were run through the sff file program (Roche) to remove sequencing adapters A and B, poor sequence data and ...Contigs and singletons were renamed in a ... See full document
14
Analysis of the leaf transcriptome of Musa acuminata during interaction with Mycosphaerella musicola : gene assembly, annotation and marker development
... regulation of plant development, sig- naling and response to environment, amongst other ...tion and expression regulation of stress-responsive ...protein and ethylene insensitive- like ... See full document
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Characterization of Liaoning cashmere goat transcriptome: sequencing, de novo assembly, functional annotation and comparative analysis.
... DNA, and are distributed in both coding and non-coding regions ...consist of repeated core sequences of 2-6 base pairs in ...unigenes. Of the 117,854 unigenes obtained from 454 ... See full document
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RNA-Seq of the Caribbean reef-building coral Orbicella faveolata (Scleractinia-Merulinidae) under bleaching and disease stress expands models of coral innate immunity
... ligands of transmembrane receptors, Frizzled (FZD) and low-density Lipoprotein Receptor (LRP), that transduce signals to control the expression of target genes required for development in a ... See full document
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Analysis of Structure and Abrasion Resistance of the Metal Composite Based on an Intermetallic FeAl Phase with VC and TiC Precipitates
... between the properties of metals and ...strength and resistance to oxidation, combined with sufficient ductility and fracture toughness, make them an attractive material for machine ... See full document
4
The Impact of the Expansion of the Bolsa Familia Program on the Time Allocation of Youths And Their Parents Lia Chitolina Miguel Nathan Foguel Naercio Menezes-Filho
... household, the program caused an increase of more than 11 percentage points in the probability of attending ...in the estimated impact is the fact that his/her family is only ... See full document
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