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Getting the most out of RNA-seq data analysis

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Table 1 Methods for calling differentially expressed genes in RNA-seq data analysis. Total citations were based on Google Scholar search result as of 22 September 2015, and normalized by number of years since formal publication
Table 2 Description of the core modeling strategy of differential gene expression analysis methods investigated in the present study.
Figure 1 Heat map of differentially expressed genes in (A) Bottomly data set (362 DEG) and (B) Cheung data set (19 DEG)
Table 3 DEG set size and expected PPV of the DEG call methods in the analysis of Rajkumar data set
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