nucleotide sequence
Complete nucleotide sequence and analysis of two conjugative broad host range plasmids from a marine microbial biofilm.
... The complete nucleotide sequence of plasmids pMCBF1 and pMCBF6 was determined and analyzed. pMCBF1 and pMCBF6 form a novel clade within the IncP-1 plasmid family designated IncP-1 z. The plasmids were ...
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MATERIALS AND METHODS Preliminary nucleotide sequence analyses and dataset assembly
... first described as the causal agent of the SSC and it was considered a perithecial variant from D. phaseolorum var. batatas (Crall, 1950), the causal agent of the dry root in sweet potato (Ipomea batata L.). Hobbs & ...
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High-throughput nucleotide sequence analysis of diverse bacterial communities in leachates of decomposing pig carcasses
... The leachate generated by the decomposition of animal carcass has been implicated as an environmental contami- nant surrounding the burial site. High-throughput nucleotide sequencing was conducted to investigate ...
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Complete Nucleotide Sequence Analysis of a Brazilian Dengue Virus Type 2 Strain
... the nucleotide and amino acids sequences of the Brazilian strain showed that it was more closely related to Asian/American-Asian DEN-2 genotype than to the native American DEN-2, confirming the Asiatic origin of ...
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Detection of three Allexivirus species infecting garlic in Brazil
... TORRES, A.C.; FAJARDO, T.V.M.; DUSI, A.N.; RESENDE, R.O.; BUSO, J.A. Shoot tip culture and thermoterapy for recovering virus- free plants of garlic. Horticultura Brasileira, v.18, p.192-194, 2000. TSUNEYOSHI, T.; ...
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Rules extraction from neural networks applied to the prediction and recognition of prokaryotic promoters
... Promoters are DNA sequences located upstream of the gene region and play a central role in gene expression. Computational techniques show good accuracy in gene prediction but are less successful in predicting promoters, ...
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De-MetaST-BLAST: a tool for the validation of degenerate primer sets and data mining of publicly available metagenomes.
... multiple nucleotide combinations ...defined nucleotide sequence dataset(s) and primer sequences that may contain degenerate ...of nucleotide sequences available in environmental metagenome and ...
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Contribution to unveiling the roles played by small non-coding RNAs in the biology and pathogenesis of Burkholderia cepacia complex bacteria
... The nucleotide sequence of the ompA gene was retrieved from the Burkholderia Genome Database and specific primers were designed for the amplification by PCR of the 669 bp fragment putatively encoding this ...
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New perspectives on host-parasite interplay by comparative transcriptomic and proteomic analyses of Schistosoma japonicum.
... with nucleotide sequence analysis of the CDSs, we undertook high-throughput proteo- mics analyses, involving high resolution in-line two-dimen- sional-nano-liquid chromatography (2D-nano-LC) and tandem mass ...
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Diversity and three-dimensional structures of the alpha Mcr of the methanogenic Archaea from the anoxic region of Tucuruí Lake, in Eastern Brazilian Amazonia
... The nucleotide sequence of the alpha subunit of the mcr gene and the reduced number of unique OTUs indi- cates the existence of a relatively low diversity of methano- genic archaea (83%-95% identity with ...
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Newcastle disease virus in Madagascar: identification of an original genotype possibly deriving from a died out ancestor of genotype IV.
... Newcastle disease (ND) is a highly contagious and widespread disease which causes severe economic losses in domestic poultry, especially in chickens [1,2]. In Africa, ND is the major constraint to rural chicken ...
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Sao Paulo Med. J. vol.114 número3
... 36. S eiki M , H attoriS , H irayam a Y , Y oshida M . H um an adult cell Iym photropic virus type II infection am ong isolated T -cell leukem ia virus: com plete nucleotide sequence of the B razilian A m ...
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Molecular cloning, sequence identification, polymorphism and association of the porcine <i>SPATS2L</i> gene
... cDNA nucleotide sequence analysis revealed that this 2361 bp cDNA sequence was not homologous to any of the known pig genes, and it was then deposited in the GenBank database (accession number: ...
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Molecular epidemiology of coxsackievirus A16: intratype and prevalent intertype recombination identified.
... of nucleotide sequence identities in the 2B, 2C, 3A, 3B, 3C and 3D regions also showed consistency with phylogenetic ...the sequence identities Table ...the sequence comparison, phylogenetic ...
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Phylogenetic analysis of Bolivian bat trypanosomes of the subgenus schizotrypanum based on cytochrome B sequence and minicircle analyses.
... its sequence by multiple insertions and deletions of uridines ...in nucleotide sequence; however, the size of minicircles is virtually conserved in ...and sequence analyses showed that a ...
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Epidemiological and functional implications of molecular variants of human papillomavirus
... Another important issue that could influ- ence the oncogenicity of the molecular vari- ants is virus-driven regulation of transcrip- tion and replication. It was initially reported that the transcriptional ...
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Viruses infecting main ornamental plants: an overview
... MATSUURA, S.; HOSHINO, S.; HAYASHI, H.; KOHGUCHI, T.; HAGIWARA, K.; OMURA, T. Effects of latent infection of stock plants and abundance of thrips on the occurrence of tomato spotted wilt virus in chrysanthemum fields. ...
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Expression and characterization of thermostable glycogen branching enzyme from Geobacillus mahadia Geo-05
... the nucleotide sequence of the branching enzyme gene (glgB) was extracted from the Geobacillus mahadia Geo-05 genome sequence provided by the Malaysia Genome ...gene sequence was then used to ...
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Genetic variability of hepatitis A virus strain HAF-203 isolated in Brazil and expression of the VP1 gene in
... Nucleotide sequence analysis - For this purpose, we selected one complete nucleotide sequence from each HAV (genotype I) including the HM-175 strain from Aus- tralia (Cohen et ...the ...
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Arq. NeuroPsiquiatr. vol.55 número3B
... Nucleotide sequence variation in the envelope of patients with tropical spastic paraparesis/human T-cell leukemia virus type I associated myelopathy.. Gessain A, Barin F, Vernant JC.[r] ...
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