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[PDF] Top 20 A rank-based sequence aligner with applications in phylogenetic analysis.

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A rank-based sequence aligner with applications in phylogenetic analysis.

A rank-based sequence aligner with applications in phylogenetic analysis.

... presented in this work can be considered as a strong argument in favor of using Local Rank Distance for computational biology tasks, in order to obtain results that are often more accurate ... See full document

18

Phylogenetic analysis of Bolivian bat trypanosomes of the subgenus schizotrypanum based on cytochrome B sequence and minicircle analyses.

Phylogenetic analysis of Bolivian bat trypanosomes of the subgenus schizotrypanum based on cytochrome B sequence and minicircle analyses.

... trees with similar topologies and were also congruent with results based on cytB ...supported in all phylogenies regardless of data sets and analytical methods in which the clade ... See full document

7

Evolutionary history of the Tip100 transposon in the genus Ipomoea

Evolutionary history of the Tip100 transposon in the genus Ipomoea

... discovered in Ipomoea purpurea (common morning glory), it was classified as an autonomous element capable of movement within the ...available in databases, the sequences of related elements in ten ... See full document

7

DendroBLAST: approximate phylogenetic trees in the absence of multiple sequence alignments.

DendroBLAST: approximate phylogenetic trees in the absence of multiple sequence alignments.

... multiple sequence alignments with addition of alignment induced ...common in phylogenetic analysis for alignments to be subject to trimming before ...mis-aligned sequence and ... See full document

11

Hepatitis C virus (HCV) genotype 1 subtype identification in new HCV drug development and future clinical practice.

Hepatitis C virus (HCV) genotype 1 subtype identification in new HCV drug development and future clinical practice.

... Direct sequence analysis of a sufficiently long portion of the NS5B gene followed by phylogenetic analysis is the reference method for identification of HCV genotype and subtype ...subtype ... See full document

9

Comparative phylogenetic analysis of Dobrava-Belgrade virus L and S genetic segments isolated from an animal reservoir in Serbia

Comparative phylogenetic analysis of Dobrava-Belgrade virus L and S genetic segments isolated from an animal reservoir in Serbia

... tree, based on the 303 nt L segments of 7 ex- amined DOBV sequences, compared sequences orig- inating from different European countries, including Greece, Slovenia, Slovakia, Germany, Russia, Estonia and Serbia ... See full document

10

Phylogenetic relationships of the most common pathogenic Candida species inferred by sequence analysis of nuclear genes

Phylogenetic relationships of the most common pathogenic Candida species inferred by sequence analysis of nuclear genes

... it in three different divisions of the former group named Eumycota (Rixford and Gilchrist, 1896; Ophuls, 1905; Ciferri and Redaelli, 1936; Baker et ...close phylogenetic relationship between ...phylogenies ... See full document

172

Newcastle disease virus in Madagascar: identification of an original genotype possibly deriving from a died out ancestor of genotype IV.

Newcastle disease virus in Madagascar: identification of an original genotype possibly deriving from a died out ancestor of genotype IV.

... virulence based on the F cleavage site pattern was confirmed by in vivo tests that has resulted in a high ICPI value ...2, with the two strains tested (MG-1992 and MG-725/08). In spite ... See full document

12

Phylogenetic analysis of glucosyltransferases and implications for the coevolution of mutans streptococci with their mammalian hosts.

Phylogenetic analysis of glucosyltransferases and implications for the coevolution of mutans streptococci with their mammalian hosts.

... aligned with MAFFT ...determined with MEGA5 [23] and PROTTEST ...conducted with both PAUP ...combined with empirical estimates of nucleotide/amino acid frequencies and, a gamma distributed ... See full document

11

Phylogenetic analysis, based on EPIYA repeats in the cag

Phylogenetic analysis, based on EPIYA repeats in the cag

... detailed sequence-analysis of individual distribution proved to be of no prognostic value, as no site-specific mu- tation in any of the three tyrosine phosphorylation motifs was observed to be ... See full document

14

Filogenia por ITS-rDNA de Colletotrichum spp., agente causal da mancha foliar da Gala em macieira

Filogenia por ITS-rDNA de Colletotrichum spp., agente causal da mancha foliar da Gala em macieira

... through with kit ABI PRISM Big Dye Terminator Cycle Sequencing Ready Reaction ...processed in the automatic DNA ABI PRISM 3100 Genetic Analyser (Applied Biosystems - ...region sequence, in ... See full document

7

A Comprehensive Comparison of Educational Growth within Four Different Developing Countries between 1990 and 2012

A Comprehensive Comparison of Educational Growth within Four Different Developing Countries between 1990 and 2012

... discussed in the introduction, there are other important elements that help us evaluate the academic level of organizations or countries, such as the number of doctoral degrees, the number of academic staff, ... See full document

23

Comparative genomics of Synechococcus and proposal of the new genus Parasynechococcus

Comparative genomics of Synechococcus and proposal of the new genus Parasynechococcus

... fluctuations in irradiance of the light harvesting apparatus of lineages WH8102, RS9917 and RCC307 has been shown to be distinct between them and also different from that of ...associated with ... See full document

18

Genetic variability of hepatitis A virus strain HAF-203 isolated in Brazil and expression of the VP1 gene in

Genetic variability of hepatitis A virus strain HAF-203 isolated in Brazil and expression of the VP1 gene in

... tion with Eco RI and Hind III (restriction sites present in plasmid pGEM2), the fragment was inserted into the ex- pression vector pET28a ...VP1pET42u. In addition, a vector control of the expression ... See full document

8

A New Comparative-Genomics Approach for Defining Phenotype-Specific Indicators Reveals Specific Genetic Markers in Predatory Bacteria.

A New Comparative-Genomics Approach for Defining Phenotype-Specific Indicators Reveals Specific Genetic Markers in Predatory Bacteria.

... predators. In order to identify genes specific to predatory bacteria, we developed a bioinformatic tool called ...gene in each genome. A putative ‘predator region’ of ~60 amino acids in the trypto- ... See full document

11

Predicting the physiological role of circadian metabolic regulation in the green alga Chlamydomonas reinhardtii.

Predicting the physiological role of circadian metabolic regulation in the green alga Chlamydomonas reinhardtii.

... Further analysis of the calculated EFMs shows that only approximately 1/50th of the original set of EFMs is still fully active after CHLAMY1 ...is in line with the reduction of carbon and energy ... See full document

12

A Protein Sequence Analysis Hardware Accelerator Based on Divergences

A Protein Sequence Analysis Hardware Accelerator Based on Divergences

... study in which we executed the comparison of the 20 top profile HMMs from the PFam-A [2] database with our 4 sets of query sequences to obtain both the similarity score and the divergence data for ... See full document

19

Analysis of Sequence Based Classifier Prediction for HIV Subtypes

Analysis of Sequence Based Classifier Prediction for HIV Subtypes

... diseases in human history. In the last two decades, over more than 60 million people have been infected with ...different in structure from other retroviruses. It is roughly spherical ... See full document

6

Serological cross-reactivity between Merkel cell polyomavirus and two closely related chimpanzee polyomaviruses.

Serological cross-reactivity between Merkel cell polyomavirus and two closely related chimpanzee polyomaviruses.

... particle- based enzyme immunoassays similar to the assays developed for MCPyV, LPyV and HPyV9 were used ...performed in microplates coated with 100 ng of extract enriched for ... See full document

7

The chitinase C gene PsChiC from Pseudomonas sp. and its synergistic

The chitinase C gene PsChiC from Pseudomonas sp. and its synergistic

... problems in the study and application of chiti- ...proteins in active form is therefore of great importance for studying the appli- cations of these ...systems based on ...characterized with ... See full document

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