[PDF] Top 20 Survey of transposable elements in sugarcane expressed sequence tags (ESTs)

... (Expressed sequence tag) da cana- de-açúcar (SUCEST) produziu um grande número de se- qüências de cDNA de diferentes tecidos submetidos ou não a diferentes condições de ... See full document

... discovery of SSR markers in ESTs provided the opportunity to develop microsatellites in a simple and di- rect way, ...mining) of EST databases. Scott et al. (2000) used this new approach ... See full document

... conversion of hydroxycinnamic acid CoA esters to their corresponding hydroxycinnamal- dehydes (Figure ...role in lignin biosynthesis, because it is able to divert general phenylpropanoid products to the ... See full document

... end in the Sugarcane Expressed Sequence Tag (SUCEST) database, which have been obtained from 37 cDNA libraries prepared from different ...number of expressed sequence ... See full document

... patterns of 277 sugarcane expressed sequence tags (EST)-contigs encoding putative defense-related (DR) proteins were evaluated using the Sugarcane EST ...involved in cell ... See full document

... isolation of the first glycine-rich proteins (GRPs) in plants a wealth of new GRPs have been ...pattern of grp genes, taken together with the distinct sub-cellular localization of some ... See full document

... two of these enzymes in ...DNA. In human cells, a third type of 3-methyl- adenine glycosylase, that bears no significant sequence similarity to the ...while in yeast one alkA ... See full document

... analysis of a sugarcane EST data- base were also selected to be used as baits (Fusaro et ...These sugarcane sequences belong to each of the different GRP classes and were chosen for being the ... See full document

... Transposable elements (TE) are major components of eukaryotic genomes and involved in cell regulation and organism ...123,889 expressed sequence tags of the ... See full document

... prevalence of clones encoding ribosomal proteins was also evident in our previous survey of the same amastigote cDNA library, using an immunoscreening ...(54%) of all clones that react ... See full document

... TDP-43 in vivo crosslinking-immunoprecipita- tion sequencing (CLIP-seq) datasets ...analysis in which each location was weighted based on the number of alignments ...contributions of ... See full document

... search in the sugarcane expressed sequence tag (SUCEST) database for homologues of plant genes involved in photo-sensory mechanisms was carried out using the basic local ... See full document

... time of divergence should be equivalent; however, if the estimates for the transposable element sequences are significantly lower than those for the host genes, then Bari was likely transferred after the ... See full document

... populations in an attempt to find strains without P elements, but none of them contained the M strains re- ported in ...findings of Clark and Kidwell (1997) reporting the existence ... See full document

... number of reads per contig varied from two to 123, with 73% of the contigs containing two or three reads and only 7% containing 10 or more reads (Figure ...out of 2,006) of the contigs ... See full document

... number of sequences generated by genome projects has increased exponentially, this phenomenon has not been followed by gene characterization at the same rate (Saghatelian & Cravat ...genomic sequence or ... See full document

... the sugarcane tissues (organs) from which the mRNA was extracted are shown in Table ...proportion of unique genes involved in each cellular role was relatively uniform among the ... See full document

... stages of insect ...operating in sugarcane which defend this plant against insect damage, the response of plants to herbivory has been extensively studied in other plant ...genes ... See full document

... functions of 14-3-3s are much more diverse than originally thought and include protein kinase C regulation (Toker et ...ADP-ribosylation of Ras (Fu et ...part of a transcription factor complex (de ... See full document

... these elements in- clude changes in gene expression due to insertion in, or ad- jacent to, the genes, which can create a new phenotype due to blocked transcription of associated genes ... See full document