Simple sequence repeats
Determination of genetic variation in Rhodiola crenulata from the Hengduan Mountains Region, China using inter-simple sequence repeats
... In recent years a number of molecular markers such as random amplified polymorphic DNA (RAPD) (Hu and Quiros, 1991; Munthali et al., 1992), amplified fragment length polymorphism (AFLP) (Vos et al., 1995), simple ...
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Genome-Wide Analysis of Simple Sequence Repeats and Efficient Development of Polymorphic SSR Markers Based on Whole Genome Re-Sequencing of Multiple Isolates of the Wheat Stripe Rust Fungus.
... resistance. Simple sequence repeats (SSRs) are widely used as molecular markers in genetic studies to determine population structure in many ...
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Evolution Analysis of Simple Sequence Repeats in Plant Genome.
... Simple sequence repeats (SSRs) are widespread units on genome sequences, and play many important roles in ...contain repeats of 1–3 nucleotides ...
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In silico analysis of Simple Sequence Repeats from chloroplast genomes of Solanaceae species
... tetranucleotide repeats were TTTA/ TAAA ...hexanucleotide repeats were represented by different motifs but they are rich in A/T nucleotides and were much more abundant in intergenic regions (Table ...
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Sequence characterization of hypervariable regions in the soybean genome: leucine-rich repeats and simple sequence repeats
... The genetic basis of cultivated soybean is rather narrow. This observation has been confirmed by analysis of agronomic traits among different genotypes, and more recently by the use of molecular markers. During the ...
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Genetic variation in oriental tobacco (Nicotiana tabacum L.) by agro- morphological traits and simple sequence repeat markers
... markers. Simple lattice design with two replications was used to evaluate 100 oriental tobacco ...13 simple sequence repeats (SSR) primer pairs were used to determine polymorphism of the test ...
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Study of simple sequence repeat markers from coffee expressed sequences associated to leaf miner resistance
... expressed simple sequence repeats (SSR) markers associated to leaf miner resistance in coffee ...Expressed Sequence Tags (EST) database. Sequence analysis of 32 selected SSR loci showed ...
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Identification of a Simple Sequence Repeat molecular-marker set for large-scale analyses of pear germplasm
... - Simple Sequence Repeats (SSR) são marcadores moleculares adequados para estimar a variação genética de recursos genéticos; no entanto, o uso de SSR em escala requer a otimização de ...
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Identification of a Simple Sequence Repeat molecular-marker set for large-scale analyses of pear germplasm
... - Simple Sequence Repeats (SSR) são marcadores moleculares adequados para estimar a variação genética de recursos genéticos; no entanto, o uso de SSR em escala requer a otimização de ...
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A great effort has been conducted during the last
... ABSTRACT: Olive (Olea europaea L. subsp. europaea var. europaea) is one of the oldest fruit tree in the Mediterranean basin, and is cultivated for oil and canned fruit. Part of this interest is driven by the economic ...
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Identification and validation of novel EST-SSR markers in olives
... olive simple sequence repeat (SSR) markers, obtained from 577,025 expressed sequence tags (ESTs) in developing olive fruits generated in the framework of the Slovenian national olive transcriptome ...
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Microbe-ID: an open source toolbox for microbial genotyping and species identification
... Multi-locus sequence types (MLST) are being widely used by researchers working with bacterial taxa to reveal the identity of samples by classification relative to known reference strains (Maiden et ...(or ...
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GENETICS AND PLANT BREEDING
... inter simple sequence repeat (ISSR) ...as simple sequence repeats (SSR), or at least validated, as has been proven in other species such as olive (Belaj et ...
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Molecular characterization of potato cultivars using SSR markers
... A batata possui uma base genética estreita, sendo assim a utiliza- ção de marcadores moleculares é uma ferramenta muito importante no processo de caracterização de bancos de germoplasma e avaliação de divergência ...
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Molecular characterisation and similarity relationships among iranian basil (Ocimum basilicum L.) accessions using inter simple sequence repeat markers
... or simple sequence repeats (SSRs) and amplified fragment length polymorphisms (AFLPs) has created the opportunity for fine-scale genetic characterisation of germplasm collections (POWELL et ...
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Caracterização molecular de videiras de Santa Catarina por marcadores microssatélites
... The available markers differ in the methodologies used to detect variability at the DNA level. Since 1990, simple sequence repeats (SSR) markers have been increasingly used as molecular descriptors ...
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Origin, evolution and genome distribution of microsatellites
... or simple sequence repeats (SSRs), have been the most widely applied class of molecular markers used in genetic studies, with applications in many fields of genetics including genetic conservation, ...
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A simple protocol for the extraction and sequence analysis of DNA from study skin of museum collections
... and sequence long DNA segments us- ing other DNA extraction methods because we did not test any other methodology to amplify and sequence long DNA segments nor have previous articles describing the use of ...
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Expansion of protein domain repeats.
... the repeats were evident in many cases, as shown in Figure ...long repeats quite drastically, with additional domains in 40% of the proteins with more than ten repeating ...
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Always look on both sides: phylogenetic information conveyed by simple sequence repeat allele sequences.
... FR sequence, and amplicon sequence variation) within each marker, and the correlation between genetic distance matrices was tested by a Mantel ...FR sequence variation were the least correlated (one ...
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