[PDF] Top 20 Identifying stably expressed genes from multiple RNA-Seq data sets
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Identifying stably expressed genes from multiple RNA-Seq data sets
... of stably-expressed genes will be useful for count ...of RNA-Seq analysis is to detect DE genes under various experimental or environmental ...estimated from relative read ... See full document
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Odorant Receptors of the New Zealand Endemic Leafroller Moth Species Planotortrix octo and P. excessana.
... four RNA-Seq libraries were generated from the antennae of 2–3 day old adult male and female ...generating from 56,971,439 to 61,132,402 raw sequence reads per library (S2 ...Table). ... See full document
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Systematically differentiating functions for alternatively spliced isoforms through integrating RNA-seq data.
... multi-isoform genes than single-isoform genes for the same GO term evaluated (Figure 4; complete evaluation results are included in Dataset ...multi-isoform genes, we acquired median AUCs of ... See full document
16
High-resolution transcriptome of human macrophages.
... macrophages, RNA-seq was performed on in vitro generated M1- and M2-like ...with RNA-seq data obtained from other eukaryotic cells [32] the majority of sequencing reads for M1- ... See full document
16
Analysis of RNA-seq data from the interaction of Coffea spp. - Colletotrichum kahawae
... Although RNA-Seq is still a technology under active development, it offers several key advantages over existing ...2), RNA-seq is not limited to identifying transcripts corresponding to ... See full document
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Glutathione S-Transferase Regulation in Calanus finmarchicus Feeding on the Toxic Dinoflagellate Alexandrium fundyense.
... Induction of GST activity in response to xenobiotics is not only typically characterized by the up-regulation of multiple GSTs, but also by the persistence of regulation for multiple days [14,42]. In the ... See full document
17
Genome-wide identification of hypoxia-induced enhancer regions
... Several next-generation sequencing-based methods have been used to dissect the function of individual nucleotides within previously known enhancers (Kwasnieski et al., 2012; Patwardhan et al., 2012; Melnikov et al., ... See full document
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Global Transcriptome Analysis Reveals Distinct Aluminum-Tolerance Pathways in the Al-Accumulating Species Hydrangea macrophylla and Marker Identification.
... Raw reads were quality-checked with FastQC package, and adaptor sequences and low quality reads were removed. We carried out a stringent filtering criterion to minimize the effects of sequencing errors during the ... See full document
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RNA-Seq reveals leaf cuticular wax-related genes in Welsh onion.
... biochemical pathways. To better understand the biological pathways in the Welsh onion, a BLASTx search against the KEGG protein database was performed using the assembled unigenes. A total of 102 unigenes were annotated ... See full document
17
GENES DUPLICADOS DA OXIDASE TERMINAL DO PLASTÍDIO (PTOX) EM AFINIDADE DAS ISOFORMAS PROTEICAS PELO LIGANTE
... Two genes encoding PTOX have been identified in soybean genome; however, their existence has not been proven experimentally, either there is not any data about the effects of these paralogs on the ...PTOX ... See full document
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Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue.
... files from RNA-Seq libraries were trimmed for stretches of adapter sequences, joined into a single read if possible followed by quality trimming using commands from the CLC Assembly Cell (CLC ... See full document
16
Identification of Differentially Expressed Genes Related to Dehydration Resistance in a Highly Drought-Tolerant Pear, Pyrus betulaefolia, as through RNA-Seq.
... stress-responsive genes, which can be generally classified into two major groups based on the functions of their products, effector molecules or regulator ...derived from stresses and sustaining cell ... See full document
21
A compilation of global bio-optical in situ data for ocean-colour satellite applications – version two
... compiled from 27 sets of in situ data, which were obtained individually either from archives that incorporate data from multiple contribu- tors (SeaBASS, NOMAD, MERMAID, ... See full document
32
RNA-SEQ applied to the peacock blenny Salaria pavo: unveiling the gene networks and signalling pathways behind phenotypic plasticity in a littoral fish
... that RNA degradation is minimal for PMIs of several hours ...males from each population) were selected for gene expression analysis of the forebrain and gonads, establishing five replicates per ...males ... See full document
308
SMP de Oliveira , AF Barbosa, ML Vilela, EF Rangel, RP Brazil,
... total RNA isolated from sugar and blood fed midguts of ...midgut RNA was mixed with ...isolation from 6% acrylamide-7M urea gel, were cloned into the pCR ... See full document
7
Small Big Data: Using multiple data-sets to explore unfolding social and economic change
... scholars from related branches of social policy have also begun to conduct allied longitudinal investigations in housing policy (Dorling, 2014), opiate drug-use (Morgan, 2014), education policy (Berridge et ... See full document
6
R-seqQI: RNA-Seq Quality Indicator
... eukaryotic genes” (CEGs) que são conservados nos ...em RNA-Seq de organismos não ...de RNA-Seq de nove organismos modelo (Arabidopsis thaliana, Aspergillus nidulans, Caenorhabditis ... See full document
137
Discovering biological progression underlying microarray samples.
... of genes that are responsible for that ...which genes are cell-cycle regulated, yet SPD recovered the correct time order and identified many genes that have been associated with the cell ... See full document
11
Elementary screening of lymph node metastatic- related genes in gastric cancer based on the co-expression network of messenger RNA, microRNA and long non-coding RNA
... three genes in yellow module (RTN1, GAPT, GRAP2) and five factors in turquoise module (CILP, SCRG1, TNFAIP8L3, MIR345 and HCG18) could be new factors related to survival of ...these genes may be associated ... See full document
10
Identification of potential target genes of USP22 via ChIP-seq and RNA-seq analysis in HeLa cells
... reads from the genomic sequencing were aligned to the human reference genome sequence ...tential genes were defined within +5 kilobases (kb) from the TSS, and 50 kb downstream from the ... See full document
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