[PDF] Top 20 The Low Noise Limit in Gene Expression.
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The Low Noise Limit in Gene Expression.
... cell-free expression systems confined in lipid vesicles [57], porous media [58], and microfluidic structures ...been the focus of any of these studies, one recent investigation [60] reported ... See full document
21
Constructing the energy landscape for genetic switching system driven by intrinsic noise.
... using the generating function [6], system size expansion [7,8], large deviation theory (LDT) [9–13], or by employing WKB approximation to the chemical master equations (CMEs) [14,15], ...tional noise ... See full document
10
Oxidized Low-density Lipoprotein Upregulates GM2 Activator Protein Gene Expression
... Oxidized low-density lipoprotein (LDL) has been shown to be a powerful regulator of gene expression in monocyte-derived ...determine the effects of oxidized LDL on macrophage ... See full document
5
Evidence based selection of housekeeping genes.
... become the method of choice due to its high sensitivity, specificity and broad quantification range for high- throughput and accurate expression profiling of selected ...is the most commonly used ... See full document
5
Variation in the large-scale organization of gene expression levels in the hippocampus relates to stable epigenetic variability in behavior.
... Because the large-scale organization of gene expression levels was associated with phenotypic differences in activity in the open field, we predicted that a developmental ... See full document
11
The utility of shallow RNA-Seq for documenting differential gene expression in genes with high and low levels of expression.
... genes. The sting gland of the honey bee is such a tissue and is partly the focus of the present ...been the subject of intense experimental work [29-31]. All of the major venom ... See full document
11
Low‑P tolerance mechanisms and differential gene expression in contrasting wheat genotypes
... increases the expression of malate transporters that, once activated, allow the release of phosphorus from chelates, increasing the Pi ...sustain the Pi content in the ... See full document
6
Stochastic Regulation of her1/7 Gene Expression Is the Source of Noise in the Zebrafish Somite Clock Counteracted by Notch Signalling.
... of noise in reaction kinetics arises from the randomness of which mole- cules associate or dissociate from one another and when these reactions ...amounts in a manner that is not wholly ... See full document
29
Transcriptome-Wide Analysis of Hepatitis B Virus-Mediated Changes to Normal Hepatocyte Gene Expression.
... particularly the ability to replicate ...HBV-mediated gene expression changes in the Huh7 cell line did identify metabolic pathways as being altered by HBV, only minimal identification ... See full document
35
CREB targets define the gene expression signature of malignancies having reduced levels of the tumor suppressor tristetraprolin.
... that the TTP-low tumor gene signature is involved in inflammatory pathways, particularly innate immunity, and the increased necrosis in tumors classified as TTP-low ... See full document
24
Gene expression changes in phosphorus deficient potato (Solanum tuberosum L.) leaves and the potential for diagnostic gene expression markers.
... placed in chitting trays for two weeks before ...of low P-status at Wharf Ground, Warwick-HRI ...(TSP). The avail- ability of soil Pi in each plot was adjusted by the addition of TSP to ... See full document
15
Control of gene expression in Trypanosomatidae
... at low levels in bloodstream para- sites indicating that some post-transcription mechanisms must take place in order to pre- vent the accumulation of PARP ...from the same polycistronic ... See full document
14
Divergent Wnt8a gene expression in teleosts.
... expressed in cells of the tailbud [17,35] (Figure S1C and ...genes in the developing brain and no staining in the trunk and tail (Figure ...However, the same holds true ... See full document
6
Erythroid-specific transcriptional changes in PBMCs from pulmonary hypertension patients.
... consequently, the corresponding genes) considered to be significantly differentially expressed between two groups of samples were those satisfying the three criteria: (i) Two- sided Welch t-test p-values ... See full document
14
Inflammatory cytokines in leprosy reactions and periodontal diseases
... detected in serum samples showed a negative correlation with TNF-α gene expression in skin biopsies of patients with ...Additionally, low and significant levels of IL-4 were found ... See full document
9
A genome-wide analysis of promoter-mediated phenotypic noise in Escherichia coli.
... of the dominant regulatory mechanisms associated with transcriptionally noisy genes is chromatin structure (noisy genes tend to contain TATA boxes and are frequently regulated by SAGA ...that in yeast there ... See full document
13
Gene expression in sows with high and low ovulation rate, high and low birth weight litter and the effect of sow catabolic status on embryonic gene expression
... traits in pigs has been reported by several studies showing that growth-retarded individuals at birth display impaired oxidative phosphorylation and mitochondrial dysfunction (Selak et ...with the oxidative ... See full document
128
Low-rank regularization for learning gene expression programs.
... incorporating the modularity constraint. We use the rank of the connectivity matrix between regulators and targets to represent the number of independent regulatory modules between ...them. ... See full document
9
Nonidentifiability of the source of intrinsic noise in gene expression from single-burst data.
... within the context of a very large class of models, experimental burst size data on its own cannot identify the relative contributions of different reactions to the overall noise ...simulating ... See full document
10
A plasmid-based Escherichia coli gene expression system with cell-to-cell variation below the extrinsic noise limit
... for the system was measured by flow ...TetR expression in Escherichia coli [7], with a response from ~1–100 nM ATc of almost two orders of magnitude of protein ...of the same promoter ... See full document
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